FastQCFastQC Report
Fri 15 Mar 2024
AA02_3029_a_merged.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAA02_3029_a_merged.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112128
Sequences flagged as poor quality0
Sequence length71-107179
%GC33

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCA6680.5957477168949772No Hit
ATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCATGTAT5830.51994149543379No Hit
ATGCCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCA2520.2247431506849315No Hit
TGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCATGTATC1820.16231449771689496No Hit
TTATGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGC1820.16231449771689496No Hit
TTATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCATGT1750.15607163242009134No Hit
TGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCAT1610.143585901826484No Hit
ATGTAGTCTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCA1380.1230736301369863No Hit
ATGTACTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCA1220.10880422374429223No Hit
GTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCATG1220.10880422374429223No Hit
TTTTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAAACCACTGCCA1140.1016695205479452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)