FastQCFastQC Report
Wed 19 Feb 2025
000000000-LPC4P_l01.4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LPC4P_l01.4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7460464
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNTCNNCNNNNTATCGNNNNNGATCTTGATTCNGGTAANNAAAAGNTAAC2467913.307984597204678No Hit
NNTCCTCCNNNTATCGANNNNGATCTTGATTCAGGTAANCAAAAGCTAAC2368833.175177844166261No Hit
NNTCNNCNNNNTATCGNNNNNTCAATGAATGGNCGGGANNGGTACNCGCG2029012.7196833869850456No Hit
NNTCCTCCNNNTATCGANNNNTCAATGAATGGCCGGGANAGGTACACGCG1920132.5737407217567165No Hit
NNTCNNCNNNNTATCGNNNNNGATCTTGATTCNGGTANNNAAAAGNTAAC152720.2047057662901396No Hit
NNTCNNCNNNNTATCGNNNNNTCAATGAATGGNCGGGNNNGGTACNCGCG120850.16198724368886439No Hit
NNTCCTCCNNNTATCGNNNNNGATCTTGATTCAGGTAANCAAAAGCTAAC108520.14546012151523016No Hit
NNTCCTCCNNNTATCGNNNNNTCAATGAATGGCCGGGANAGGTACACGCG83460.11186971748674078No Hit
NNTCNNCNNNNTATCGNNNNNTCAATGAATGGNCGGGTNNGGTACNCGCG79190.10614621288970766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)