FastQCFastQC Report
Mon 23 Sep 2024
000000000-LNMRD_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LNMRD_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5873732
Sequences flagged as poor quality0
Sequence length301
%GC50

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT519040.8836630612360251No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT488990.832503083218642No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT333930.5685141916587273No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT313250.5333065928101588No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT285850.48665822683091436No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT258410.4399417610473205No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT257220.43791579186793No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT255430.4348683256233005No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT248410.42291680996000497No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT235670.40122702227476503No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT218160.3714163329208755No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT213580.363618905322885No Hit
GAGTGTCAGCCGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT201630.34327408877354293No Hit
GAGTGTCAGCAGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT190230.32386564453400324No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT184440.31400819785444756No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT175550.2988730163378241No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT163280.27798340135368793No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT162190.27612768168517055No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT157250.2677173558480367No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT147030.2503178558368002No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT144550.2460956679671459No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT138200.2352848240267006No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT135370.2304667628689903No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT134510.22900261707548114No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT134440.22888344241786995No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT130500.22217561168946764No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT130370.2219542873253325No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT127390.21688085190131248No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT125700.21400363516755616No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT123170.2096963225424653No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT120850.20574653389020814No Hit
GAGTGCCAGCCGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT115100.1959571870150017No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT111920.19054325256923538No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC101520.1728373034384272No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT101490.1727862285851653No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT99030.16859809061768566No Hit
GAGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT98870.1683256914002886No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT97990.16682749570460484No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT96680.1645972271121665No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT95610.16277555734582375No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC95300.16224778386211697No Hit
GAGTGCCAGCCGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT95160.16200943454689454No Hit
GAGTGTCAGCCGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT93830.1597451160522816No Hit
GAGTGTCAGCAGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT92250.15705517378048572No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT88020.14985361947055126No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC86860.14787872514442266No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT85320.14525688267697606No Hit
GAGTGCCAGCAGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT85300.14522283277480144No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT83300.14181784255733834No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT82570.1405750211279643No Hit
GAGTGTCAGCCGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT82190.1399280729866463No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC80330.13676143208440564No Hit
GAGTGTCAGCAGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT78580.1337820656441254No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT77320.13163692180712364No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT75900.12921937875272482No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC75820.12908317914402634No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT75820.12908317914402634No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC74460.12676778579615142No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC72900.12411189342653019No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT72780.1239075940134824No Hit
GAGTGCCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT72650.1236862696493473No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT72420.12329469577433905No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT72120.12278394724171958No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT71780.12220509890475086No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT71700.12206889929605232No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC71500.12172840027430601No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT70430.11990673050796324No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT67980.11573561749157095No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT67850.11551429312743584No Hit
GAGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT67020.11410122218718866No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT66830.11377774811652966No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT65710.11187095359475033No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGAGCCAAGCGTTATCCGAATTC65440.11141127991539279No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT64590.10996415907297098No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT63580.10824463901315212No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGAGCCAAGCGTTATCCGAATTC62840.10698479263269076No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTT62300.10606544527397573No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTT60740.10340955290435451No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)