FastQCFastQC Report
Fri 8 Nov 2024
000000000-LMT66_l01_n01_112.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LMT66_l01_n01_112.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1665
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTG30.18018018018018017No Hit
CGCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACG30.18018018018018017No Hit
CACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGT30.18018018018018017No Hit
CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTG20.12012012012012012No Hit
AGTCTGAAACATGATTAAACTCCTAAGCAGAAAACCTACCGCGCTTCGCT20.12012012012012012No Hit
CTGGTAGCTTTAAGCGGCTCACCTTTAGCATCAACAGGCCACAACCAACC20.12012012012012012No Hit
TATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCAGAA20.12012012012012012No Hit
TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAA20.12012012012012012No Hit
GTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGA20.12012012012012012No Hit
ACAGCTTCTTGGGAAGTAGCGACAGCTTGGTTTTTAGTGAGTTGTTCCAT20.12012012012012012No Hit
AACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGA20.12012012012012012No Hit
CTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT20.12012012012012012No Hit
GATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGAC20.12012012012012012No Hit
CAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAA20.12012012012012012No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAATCGTTAATCTCGTAT20.12012012012012012TruSeq Adapter, Index 9 (97% over 37bp)
AGGAAAGCGAGGGTATCCTACAAAGTCCAGCGTACCATAAACGCAAGCCT20.12012012012012012No Hit
GTGTGAGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGA20.12012012012012012No Hit
AACGCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCATTTTGTG20.12012012012012012No Hit
CAATATCTGGTTGAACGGCGTCGCGTCGTAACCCAGCTTGGTAAGTTGGA20.12012012012012012No Hit
CTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATG20.12012012012012012No Hit
CAAACAGGCAAAAAATTTAGGGTCGGCATCAAAAGCAATATCAGCACCAA20.12012012012012012No Hit
GTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGG20.12012012012012012No Hit
AATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATC20.12012012012012012No Hit
AACAGGCAAAAAATTTAGGGTCGGCATCAAAAGCAATATCAGCACCAACA20.12012012012012012No Hit
TCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAA20.12012012012012012No Hit
GAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTGA20.12012012012012012No Hit
GCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCA20.12012012012012012No Hit
TCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGC20.12012012012012012No Hit
AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATG20.12012012012012012No Hit
TGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAAT20.12012012012012012No Hit
CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT20.12012012012012012No Hit
GCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGA20.12012012012012012No Hit
GTCTAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCA20.12012012012012012No Hit
ATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAA20.12012012012012012No Hit
TTTAGCGTTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAA20.12012012012012012No Hit
CTGACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGAAAA20.12012012012012012No Hit
GCTCCCAAGCATTAAGCTCAGGAAATGCAGCAGCAAGATAATCACGAGTA20.12012012012012012No Hit
TCACCTTTAGCATCAACAGGCCACAACCAACCAGAACGTGAAAAAGCGTC20.12012012012012012No Hit
GCATAACGATACCACTGACCCTCAGCAATCTTAAACTTCTTAGACGAATC20.12012012012012012No Hit
TAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGT20.12012012012012012No Hit
AAATAAAAGTCTGAAACATGATTAAACTCCTAAGCAGAAAACCTACCGCG20.12012012012012012No Hit
GCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAG20.12012012012012012No Hit
TTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCA20.12012012012012012No Hit
CGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATG20.12012012012012012No Hit
TTTATCAGCGGCAGACTTGCCACCAAGTCCAACCAAATCAAGCAACTTAT20.12012012012012012No Hit
AGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTC20.12012012012012012No Hit
AAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAA20.12012012012012012No Hit
TCAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTT20.12012012012012012No Hit
GAAGACGGCCATTAGCTGTACCATACTCAGGCACACAAAAATACTGATAG20.12012012012012012No Hit
TCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATT20.12012012012012012No Hit
TAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTC20.12012012012012012No Hit
AAAGAAACGCGGCACAGAATGTTTATAGGTCTGTTGAACACGACCAGAAA20.12012012012012012No Hit
TGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGTCCCTAGTT20.12012012012012012No Hit
CCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAGGGACGGCCTC20.12012012012012012No Hit
CTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCA20.12012012012012012No Hit
TGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATG20.12012012012012012No Hit
TAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTA20.12012012012012012No Hit
TTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGC20.12012012012012012No Hit
TGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAAC20.12012012012012012No Hit
TGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGACTCAA20.12012012012012012No Hit
TTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCA20.12012012012012012No Hit
AGCAGTCCACTTCGATTTAATTCGTAAACAAGCAGTAGTAATTCCTGCTT20.12012012012012012No Hit
AATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGGAGACAAATAAT20.12012012012012012No Hit
CTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC20.12012012012012012No Hit
ATTAACCGTCAAACTATCAAAATATAACGTTGACGATGTAGCTTTAGGTG20.12012012012012012No Hit
AACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGA20.12012012012012012No Hit
CTCTACGCGATTTCATAGTGGAGGCCTCCAGCAATCTTGAACACTCATCC20.12012012012012012No Hit
AGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTT20.12012012012012012No Hit
CTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGC20.12012012012012012No Hit
GTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCAT20.12012012012012012No Hit
AGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCT20.12012012012012012No Hit
ATATAACTGGTAGCTTTAAGCGGCTCACCTTTAGCATCAACAGGCCACAA20.12012012012012012No Hit
ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC20.12012012012012012No Hit
GAACGGACTGGAAACACTGGTCATAATCATGGTGGCGAATAAGTACGCGT20.12012012012012012No Hit
GACCAAACCATGAAACCAACATAAACATTATTGCCCGGCGTACGGGGAAG20.12012012012012012No Hit
CTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTC20.12012012012012012No Hit
GAACCATACGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTA20.12012012012012012No Hit
TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCG20.12012012012012012No Hit
ATATCTGACTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCAT20.12012012012012012No Hit
GCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACAT20.12012012012012012No Hit
AGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGG20.12012012012012012No Hit
AAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCT20.12012012012012012No Hit
CTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCT20.12012012012012012No Hit
TACTGTAACCATAAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGA20.12012012012012012No Hit
AGCAGTAGTAATTCCTGCTTTATCAAGATAATTTTTCGACTCATCAGAAA20.12012012012012012No Hit
CTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAA20.12012012012012012No Hit
ACAAATGCTTAGGGATTTTATTGGTATCAGGGTTAATCGTGCCAAGAAAA20.12012012012012012No Hit
TTCAAGAAGTCCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAG20.12012012012012012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)