FastQCFastQC Report
Tue 18 Jun 2024
000000000-LJVBV_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJVBV_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10537851
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT400800.3803432028029244No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT364300.34570615963349643No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT246440.2338617237992832No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT230000.21826081997173807No Hit
TTCCGGCTGATCGTCTGATTGCCAACGTCAACGGCGTGATGAATGCTGTA111890.10617914411581642No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)