FastQCFastQC Report
Mon 3 Jun 2024
000000000-LJMMB_l01_n02_BS_CR_55.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJMMB_l01_n02_BS_CR_55.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4828866
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAACCAGGTGTGTAGATCTC244240.5057916289248863Illumina Single End PCR Primer 1 (96% over 33bp)
CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGATAGATCGGAAG104930.21729739446072846ABI Solid3 Adapter B (100% over 41bp)
ATCACCGACTGCCCATAGAGAGGAAAGCGGAGGCGTAGTGGAGATCGGAAG104070.2155164380208521ABI Solid3 Adapter B (100% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)