FastQCFastQC Report
Mon 3 Jun 2024
000000000-LJMMB_l01_n01_BS_CR_53.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJMMB_l01_n01_BS_CR_53.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5532438
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGCGACTATCTCGTATG712641.2881120402976047TruSeq Adapter, Index 10 (97% over 37bp)
CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGATAGATCGGAAG163440.2954212952770551ABI Solid3 Adapter B (100% over 41bp)
ATCACCGACTGCCCATAGAGAGGAAAGCGGAGGCGTAGTGGAGATCGGAAG162030.2928726901232332ABI Solid3 Adapter B (100% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)