FastQCFastQC Report
Mon 3 Jun 2024
000000000-LJMMB_l01_n01_BS_CR_52.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJMMB_l01_n01_BS_CR_52.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4783633
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGATCACGATCTCGTATG509941.0660098715766866TruSeq Adapter, Index 4 (97% over 39bp)
ATCACCGACTGCCCATAGAGAGGAAAGCGGAGGCGTAGTGGAGATCGGAAG71740.14996969876242597ABI Solid3 Adapter B (100% over 41bp)
CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGATAGATCGGAAG68390.14296665316925442ABI Solid3 Adapter B (100% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)