FastQCFastQC Report
Tue 22 Oct 2024
000000000-LJM9J_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJM9J_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2604632
Sequences flagged as poor quality0
Sequence length301
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT402281.5444792200971194No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT385611.4804778563728005No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT265541.0194914291155144No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT250900.9632838727313494No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT225880.8672242374354612No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATT201330.7729690797010863No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT192800.7402197316165968No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT185380.7117320220284478No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT177630.6819773388332786No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT176170.6763719404507047No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT161950.6217768959300201No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT160500.6162098906870529No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT145560.558850540114688No Hit
GAGTGTCAGCCGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT141450.5430709597363467No Hit
GAGTGTCAGCAGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT139340.5349700072793393No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTT131640.5054072897822034No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT129920.4988036697698562No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT126080.4840607041608949No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT118820.4561872848064525No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT117130.4496988442129253No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT110420.42393704753684974No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT104140.39982615586386094No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT103920.39898150679251426No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT102450.3933377152703338No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT101580.38999751212455347No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT98480.37809563884648584No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATT97930.37598401616811894No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCGGAATT95780.3677294911526849No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT93810.36016604265017094No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT92140.35375438833585704No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT90540.3476114859987898No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATT84150.3230782697901277No Hit
GAGTGCCAGCCGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT82190.31555321442722045No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT77450.29735486625365887No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT75160.28856283728373144No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC72900.279885987732624No Hit
GAGTGCCAGCCGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT72450.27815829645032386No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT72110.2768529297036971No Hit
GAGTGCCAGCAGCCGCGGTAATACGGGGGGGGCAAGCGTTGTTCGGAATT71980.2763538188888104No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT70530.2707868136458433No Hit
GAGTGTCAGCCGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT69060.26514302212366275No Hit
GAGTGTCAGCAGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT68950.2647206975879894No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC68780.264068014214676No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT66560.2555447372219953No Hit
GAGTGCCAGCAGCCGCGGTAAAACGTAGGAGGCGAGCGTTATCCGGATTT66130.25389383221890843No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT65410.2511295261672282No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT64810.248825937790828No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC60820.23350707508776672No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC59760.2294374022894597No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGATTT59680.22913025717260635No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT59060.22674988251699282No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT59050.22671148937738617No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT59000.22651952367935277No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT57960.2225266371602591No Hit
GAGTGTCAGCCGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT57220.21968554482936553No Hit
GAGTGTCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC56510.21695963191729195No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT56260.21599980342712521No Hit
GAGTGTCAGCAGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT55970.2148864023785318No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT55530.21319710423583832No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT55170.2118149512099982No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT54600.209626542252418No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT54500.2092426108563513No Hit
GAGTGTCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC54310.20851314120382455No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT54160.2079372441097245No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT52910.2031381016588908No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATT52670.2022166663083307No Hit
GAGTGCCAGCCGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT52400.2011800515389506No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT52200.2004121887468172No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT52170.2002970093279972No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT52130.20014343676957053No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC51760.19872289060412374No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC51750.19868449746451708No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT51150.19638090908811684No Hit
GAGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATT50430.19361660303643663No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGAGCCAAGCGTTATCCGAATTC49160.18874067430638955No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGAGCCAAGCGTTATCCGAATTC48390.18578440255667594No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTT47780.18344242104066907No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTT46560.17875845800865536No Hit
GAGTGCCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT42350.16259494623424728No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGATTT41890.16082886181234046No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATT41870.16075207553312715No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGATTT41750.1602913578578471No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATT41360.158794025413187No Hit
GAGTGCCAGCCGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT41100.15779580378341354No Hit
GAGTGCCAGCCGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT41010.15745026552695351No Hit
GAGTGCCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC40780.1565672233160001No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTC39830.15291987505336646No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGCAGCAAGCGTTGTTCGGAGTT39700.15242076423847975No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGCAGCAAGCGTTGTTCGGAGTT39510.15169129458595304No Hit
GAGTGTCAGCAGCCGCGGTAAAACGTAGGAGGCAAGCGTTATCCGGATTC39430.15138414946909967No Hit
GAGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATT39240.15065467981657293No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGAGGCAAGCGTTATCCGGATTC38280.14696893841433262No Hit
GAGTGTCAGCCGCCGCGGTAAAACGTAGGATCCGAGCGTTATCCGAATTC38180.14658500701826593No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGGGGCAAGCGTTATTCGGAATT37680.1446653500379324No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGGGGCAAGCGTTATTCGGAATT37480.143897487245799No Hit
GAGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAATC37380.14351355584973233No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT37220.14289926561602562No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGGGGCAAGCGTTGTTCGGAATT36740.14105639491490543No Hit
GAGTGCCAGCAGCCGCGGTAACACGTAGGATCCGAGCGTTATCCGAATTT36350.1395590624702453No Hit
GAGTGCCAGCAGCCGCGGTAATACGGAGGGGGCTAGCGTTGTTCGGAATT36270.13925191735339196No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCGAGCGTTGTCCGGATTT35770.13733226037305846No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGGGGCAAGCGTTGTTCGGAATT34890.1339536640876715No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC34690.13318580129553811No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCGAGCGTTGTCCGGATTT34050.13072864036071122No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGGGCGAGCGTTGTCCGGATTC33950.13034470896464453No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT33930.13026792268543116No Hit
GAGTGCCAGCCGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT33840.12992238442897114No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGCAGCGAGCGTTGTTCGGAGTT33580.12892416279919774No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGGGCGAGCGTTGTCCGGATTC33470.12850183826352438No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATC33470.12850183826352438No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTC33420.128309872565491No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTC33310.12788754802981764No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATC33130.12719647151689759No Hit
GAGTGCCAGCCGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC32390.124355379186004No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGTGGCGAGCGTTATCCGGAATT31740.12185982511157047No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATC31620.12139910743629043No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGATCCGAGCGTTATCCGAATTT31520.12101517604022373No Hit
GAGTGTCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCGGAATT31140.11955623673517027No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGATCCGAGCGTTATCCGAATTT31140.11955623673517027No Hit
GAGTGCCAGCAGCCGCGGTAATACCAGCACCCCGAGTGGTCGGGACGATT31110.11944105731635024No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCGAGCGTTGTCCGGAATC30860.11848122882618352No Hit
GAGTGCCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT30720.11794372487169012No Hit
GAGTGCCAGCCGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT30620.11755979347562343No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTGTCCGGAATC30430.11683032382309669No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT30080.11548656393686324No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT29910.11483388056354987No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT29890.11475709428433652No Hit
GAGTGTCAGCCGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCGGAATT29870.11468030800512317No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC29540.11341333439810308No Hit
GAGTGTCAGCCGCCGCGGTAATACGTAGGGCGCAAGCGTTGTCCGGAATT29490.11322136870006971No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTGTCCGGAATT29160.11195439509304962No Hit
GAGTGCCAGCCGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT28740.11034188322956948No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATG28710.11022670381074946No Hit
GAGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATC28680.11011152439192946No Hit
GAGTGTCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTATCCGGAATT28500.1094204478790094No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATG28260.10849901252844932No Hit
GAGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGTTCGGAATT28240.10842222624923598No Hit
GAGTGCCAGCAGCCGCGGTAATACAGAGGTGGCAAGCGTTGTTCGGAATT28000.1075007908986759No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGAATC27100.1040454083340756No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCGGAATT27030.10377665635682891No Hit
GAGTGCCAGCCGCCGCGGTAAAACGTAGGAGCCAAGCGTTATCCGAATTC26990.10362308379840224No Hit
GAGTGTCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTGTTCGGAATT26410.10139628170121537No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTGTCCGGATTT26360.10120431600318203No Hit
GAGTGTCAGCCGCCGCGGTAATACGGAGGGTGCGAGCGTTGTTCGGAATT26090.10016770123380193No Hit
GAGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGAATT26050.10001412867537526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)