FastQCFastQC Report
Sat 9 Nov 2024
000000000-LJ9RB_l01_n01_504.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LJ9RB_l01_n01_504.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11086775
Sequences flagged as poor quality0
Sequence length151
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAAGGACATCTCGTAT685814261.85876415819749TruSeq Adapter, Index 2 (97% over 38bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACCGAAGGACATCTCGTATGCC278020.2507672429538797TruSeq Adapter, Index 2 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAAGGACATATCGTAT141110.12727777013604044TruSeq Adapter, Index 2 (97% over 38bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)