FastQCFastQC Report
Thu 14 Mar 2024
000000000-LHBCL_l01_n02_BS_CR_33.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LHBCL_l01_n02_BS_CR_33.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5196818
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATGCCACAGTGTAGATCTC525911.0119846413709312Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)