[2024-02-07 14:47:31,418] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-02-07 14:47:31,418] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-02-07 14:47:31,418] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-02-07 14:47:31,421] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-02-07 14:47:31,421] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-02-07 14:47:31,421] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-02-07 14:47:31,562] multiqc [WARNING] MultiQC Version v1.19 now available! [2024-02-07 14:47:31,562] multiqc [INFO ] This is MultiQC v1.9 [2024-02-07 14:47:31,562] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-02-07 14:47:31,562] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/a0/962760287d1240869947f43fd188fe/1 [2024-02-07 14:47:31,562] multiqc [INFO ] Template : default [2024-02-07 14:47:31,562] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-02-07 14:47:31,562] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/a0/962760287d1240869947f43fd188fe/1 [2024-02-07 14:47:31,563] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-02-07 14:47:31,563] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-42695306/tmpoq7c8pfy [2024-02-07 14:47:31,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_01h_1_fastqc.html [2024-02-07 14:47:31,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_01h_1_fastqc.html [2024-02-07 14:47:31,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_01h_2_fastqc.html [2024-02-07 14:47:31,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_01h_2_fastqc.html [2024-02-07 14:47:31,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_02h_1_fastqc.html [2024-02-07 14:47:31,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_02h_1_fastqc.html [2024-02-07 14:47:31,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_02h_2_fastqc.html [2024-02-07 14:47:31,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_02h_2_fastqc.html [2024-02-07 14:47:32,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_03h_1_fastqc.html [2024-02-07 14:47:32,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_03h_1_fastqc.html [2024-02-07 14:47:32,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_03h_2_fastqc.html [2024-02-07 14:47:32,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_03h_2_fastqc.html [2024-02-07 14:47:32,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_04h_1_fastqc.html [2024-02-07 14:47:32,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_04h_1_fastqc.html [2024-02-07 14:47:32,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_04h_2_fastqc.html [2024-02-07 14:47:32,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_04h_2_fastqc.html [2024-02-07 14:47:32,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_06h_1_fastqc.html [2024-02-07 14:47:32,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_06h_1_fastqc.html [2024-02-07 14:47:32,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_06h_2_fastqc.html [2024-02-07 14:47:32,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_06h_2_fastqc.html [2024-02-07 14:47:32,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_08h_1_fastqc.html [2024-02-07 14:47:32,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_08h_1_fastqc.html [2024-02-07 14:47:32,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_08h_2_fastqc.html [2024-02-07 14:47:32,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_08h_2_fastqc.html [2024-02-07 14:47:32,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_0h_1_fastqc.html [2024-02-07 14:47:32,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_0h_1_fastqc.html [2024-02-07 14:47:32,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_0h_2_fastqc.html [2024-02-07 14:47:32,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_0h_2_fastqc.html [2024-02-07 14:47:32,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_12h_1_fastqc.html [2024-02-07 14:47:32,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_12h_1_fastqc.html [2024-02-07 14:47:32,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_12h_2_fastqc.html [2024-02-07 14:47:32,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_12h_2_fastqc.html [2024-02-07 14:47:33,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_24h_1_fastqc.html [2024-02-07 14:47:33,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_24h_1_fastqc.html [2024-02-07 14:47:33,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_24h_2_fastqc.html [2024-02-07 14:47:33,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_24h_2_fastqc.html [2024-02-07 14:47:33,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_48h_1_fastqc.html [2024-02-07 14:47:33,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_48h_1_fastqc.html [2024-02-07 14:47:33,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_48h_2_fastqc.html [2024-02-07 14:47:33,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_4sU_200_48h_2_fastqc.html [2024-02-07 14:47:33,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_6sG_1000_24h_1_fastqc.html [2024-02-07 14:47:33,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_6sG_1000_24h_1_fastqc.html [2024-02-07 14:47:33,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_6sG_200_24h_1_fastqc.html [2024-02-07 14:47:33,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_K562_6sG_200_24h_1_fastqc.html [2024-02-07 14:47:33,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_RS_4sU_1000_15h_2_fastqc.html [2024-02-07 14:47:33,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_RS_4sU_1000_15h_2_fastqc.html [2024-02-07 14:47:33,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_RS_4sU_1000_24h_2_fastqc.html [2024-02-07 14:47:33,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_RS_4sU_1000_24h_2_fastqc.html [2024-02-07 14:47:33,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_undetermined_fastqc.html [2024-02-07 14:47:33,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n01_undetermined_fastqc.html [2024-02-07 14:47:33,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_01h_1_fastqc.html [2024-02-07 14:47:33,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_01h_1_fastqc.html [2024-02-07 14:47:33,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_01h_2_fastqc.html [2024-02-07 14:47:33,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_01h_2_fastqc.html [2024-02-07 14:47:33,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_02h_1_fastqc.html [2024-02-07 14:47:33,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_02h_1_fastqc.html [2024-02-07 14:47:34,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_02h_2_fastqc.html [2024-02-07 14:47:34,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_02h_2_fastqc.html [2024-02-07 14:47:34,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_03h_1_fastqc.html [2024-02-07 14:47:34,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_03h_1_fastqc.html [2024-02-07 14:47:34,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_03h_2_fastqc.html [2024-02-07 14:47:34,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_03h_2_fastqc.html [2024-02-07 14:47:34,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_04h_1_fastqc.html [2024-02-07 14:47:34,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_04h_1_fastqc.html [2024-02-07 14:47:34,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_04h_2_fastqc.html [2024-02-07 14:47:34,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_04h_2_fastqc.html [2024-02-07 14:47:34,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_06h_1_fastqc.html [2024-02-07 14:47:34,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_06h_1_fastqc.html [2024-02-07 14:47:34,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_06h_2_fastqc.html [2024-02-07 14:47:34,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_06h_2_fastqc.html [2024-02-07 14:47:34,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_08h_1_fastqc.html [2024-02-07 14:47:34,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_08h_1_fastqc.html [2024-02-07 14:47:34,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_08h_2_fastqc.html [2024-02-07 14:47:34,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_08h_2_fastqc.html [2024-02-07 14:47:34,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_0h_1_fastqc.html [2024-02-07 14:47:34,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_0h_1_fastqc.html [2024-02-07 14:47:34,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_0h_2_fastqc.html [2024-02-07 14:47:34,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_0h_2_fastqc.html [2024-02-07 14:47:35,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_12h_1_fastqc.html [2024-02-07 14:47:35,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_12h_1_fastqc.html [2024-02-07 14:47:35,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_12h_2_fastqc.html [2024-02-07 14:47:35,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_12h_2_fastqc.html [2024-02-07 14:47:35,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_24h_1_fastqc.html [2024-02-07 14:47:35,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_24h_1_fastqc.html [2024-02-07 14:47:35,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_24h_2_fastqc.html [2024-02-07 14:47:35,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_24h_2_fastqc.html [2024-02-07 14:47:35,374] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_48h_1_fastqc.html [2024-02-07 14:47:35,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_48h_1_fastqc.html [2024-02-07 14:47:35,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_48h_2_fastqc.html [2024-02-07 14:47:35,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_4sU_200_48h_2_fastqc.html [2024-02-07 14:47:35,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_6sG_1000_24h_1_fastqc.html [2024-02-07 14:47:35,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_6sG_1000_24h_1_fastqc.html [2024-02-07 14:47:35,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_6sG_200_24h_1_fastqc.html [2024-02-07 14:47:35,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_K562_6sG_200_24h_1_fastqc.html [2024-02-07 14:47:35,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_RS_4sU_1000_15h_2_fastqc.html [2024-02-07 14:47:35,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_RS_4sU_1000_15h_2_fastqc.html [2024-02-07 14:47:35,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_RS_4sU_1000_24h_2_fastqc.html [2024-02-07 14:47:35,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_RS_4sU_1000_24h_2_fastqc.html [2024-02-07 14:47:35,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_undetermined_fastqc.html [2024-02-07 14:47:35,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LFHWK_l01_n02_undetermined_fastqc.html [2024-02-07 14:47:36,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,012] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-02-07 14:47:36,602] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-02-07 14:47:36,604] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-02-07 14:47:36,627] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 25 samples (table) [2024-02-07 14:47:36,629] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-02-07 14:47:36,639] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-02-07 14:47:36,645] multiqc [DEBUG ] No samples found: conpair [2024-02-07 14:47:36,652] multiqc [DEBUG ] No samples found: peddy [2024-02-07 14:47:36,662] multiqc [DEBUG ] No samples found: somalier [2024-02-07 14:47:36,668] multiqc [DEBUG ] No samples found: methylQA [2024-02-07 14:47:36,685] multiqc [DEBUG ] No samples found: mosdepth [2024-02-07 14:47:36,691] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-02-07 14:47:36,695] multiqc [DEBUG ] No samples found: qualimap [2024-02-07 14:47:36,707] multiqc [DEBUG ] No samples found: preseq [2024-02-07 14:47:36,715] multiqc [DEBUG ] No samples found: quast [2024-02-07 14:47:36,724] multiqc [DEBUG ] No samples found: qorts [2024-02-07 14:47:36,738] multiqc [DEBUG ] No samples found: rna_seqc [2024-02-07 14:47:36,745] multiqc [DEBUG ] No samples found: rockhopper [2024-02-07 14:47:36,752] multiqc [DEBUG ] No samples found: rsem [2024-02-07 14:47:36,768] multiqc [DEBUG ] No samples found: rseqc [2024-02-07 14:47:36,774] multiqc [DEBUG ] No samples found: busco [2024-02-07 14:47:36,780] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-02-07 14:47:36,786] multiqc [DEBUG ] No samples found: disambiguate [2024-02-07 14:47:36,792] multiqc [DEBUG ] No samples found: supernova [2024-02-07 14:47:36,810] multiqc [DEBUG ] No samples found: deeptools [2024-02-07 14:47:36,816] multiqc [DEBUG ] No samples found: sargasso [2024-02-07 14:47:36,822] multiqc [DEBUG ] No samples found: verifybamid [2024-02-07 14:47:36,828] multiqc [DEBUG ] No samples found: mirtrace [2024-02-07 14:47:36,834] multiqc [DEBUG ] No samples found: happy [2024-02-07 14:47:36,841] multiqc [DEBUG ] No samples found: mirtop [2024-02-07 14:47:36,850] multiqc [DEBUG ] No samples found: homer [2024-02-07 14:47:36,867] multiqc [DEBUG ] No samples found: macs2 [2024-02-07 14:47:36,873] multiqc [DEBUG ] No samples found: theta2 [2024-02-07 14:47:36,879] multiqc [DEBUG ] No samples found: snpeff [2024-02-07 14:47:36,889] multiqc [DEBUG ] No samples found: gatk [2024-02-07 14:47:36,895] multiqc [DEBUG ] No samples found: htseq [2024-02-07 14:47:36,902] multiqc [DEBUG ] No samples found: bcftools [2024-02-07 14:47:36,908] multiqc [DEBUG ] No samples found: featureCounts [2024-02-07 14:47:36,920] multiqc [DEBUG ] No samples found: fgbio [2024-02-07 14:47:36,943] multiqc [DEBUG ] No samples found: dragen [2024-02-07 14:47:36,949] multiqc [DEBUG ] No samples found: dedup [2024-02-07 14:47:36,956] multiqc [DEBUG ] No samples found: damageprofiler [2024-02-07 14:47:36,990] multiqc [DEBUG ] No samples found: biobambam2 [2024-02-07 14:47:36,996] multiqc [DEBUG ] No samples found: mtnucratio [2024-02-07 14:47:36,999] multiqc [DEBUG ] No samples found: picard [2024-02-07 14:47:37,005] multiqc [DEBUG ] No samples found: prokka [2024-02-07 14:47:37,010] multiqc [DEBUG ] No samples found: samblaster [2024-02-07 14:47:37,023] multiqc [DEBUG ] No samples found: samtools [2024-02-07 14:47:37,029] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-02-07 14:47:37,036] multiqc [DEBUG ] No samples found: bamtools [2024-02-07 14:47:37,042] multiqc [DEBUG ] No samples found: jellyfish [2024-02-07 14:47:37,053] multiqc [DEBUG ] No samples found: vcftools [2024-02-07 14:47:37,059] multiqc [DEBUG ] No samples found: longranger [2024-02-07 14:47:37,065] multiqc [DEBUG ] No samples found: stacks [2024-02-07 14:47:37,072] multiqc [DEBUG ] No samples found: varscan2 [2024-02-07 14:47:37,098] multiqc [DEBUG ] No samples found: bbmap [2024-02-07 14:47:37,111] multiqc [DEBUG ] No samples found: bismark [2024-02-07 14:47:37,118] multiqc [DEBUG ] No samples found: biscuit [2024-02-07 14:47:37,124] multiqc [DEBUG ] No samples found: hicexplorer [2024-02-07 14:47:37,130] multiqc [DEBUG ] No samples found: hicup [2024-02-07 14:47:37,137] multiqc [DEBUG ] No samples found: hicpro [2024-02-07 14:47:37,142] multiqc [DEBUG ] No samples found: salmon [2024-02-07 14:47:37,148] multiqc [DEBUG ] No samples found: kallisto [2024-02-07 14:47:37,155] multiqc [DEBUG ] No samples found: slamdunk [2024-02-07 14:47:37,161] multiqc [DEBUG ] No samples found: star [2024-02-07 14:47:37,167] multiqc [DEBUG ] No samples found: hisat2 [2024-02-07 14:47:37,173] multiqc [DEBUG ] No samples found: tophat [2024-02-07 14:47:37,179] multiqc [DEBUG ] No samples found: bowtie2 [2024-02-07 14:47:37,185] multiqc [DEBUG ] No samples found: bowtie1 [2024-02-07 14:47:37,192] multiqc [DEBUG ] No samples found: snpsplit [2024-02-07 14:47:37,197] multiqc [DEBUG ] No samples found: kat [2024-02-07 14:47:37,204] multiqc [DEBUG ] No samples found: leehom [2024-02-07 14:47:37,216] multiqc [DEBUG ] No samples found: adapterRemoval [2024-02-07 14:47:37,221] multiqc [DEBUG ] No samples found: clipandmerge [2024-02-07 14:47:37,228] multiqc [DEBUG ] No samples found: cutadapt [2024-02-07 14:47:37,237] multiqc [DEBUG ] No samples found: flexbar [2024-02-07 14:47:37,243] multiqc [DEBUG ] No samples found: kaiju [2024-02-07 14:47:37,249] multiqc [DEBUG ] No samples found: kraken [2024-02-07 14:47:37,255] multiqc [DEBUG ] No samples found: malt [2024-02-07 14:47:37,261] multiqc [DEBUG ] No samples found: trimmomatic [2024-02-07 14:47:37,267] multiqc [DEBUG ] No samples found: sickle [2024-02-07 14:47:37,273] multiqc [DEBUG ] No samples found: skewer [2024-02-07 14:47:37,279] multiqc [DEBUG ] No samples found: sortmerna [2024-02-07 14:47:37,284] multiqc [DEBUG ] No samples found: biobloomtools [2024-02-07 14:47:37,290] multiqc [DEBUG ] No samples found: fastq_screen [2024-02-07 14:47:37,296] multiqc [DEBUG ] No samples found: afterqc [2024-02-07 14:47:37,302] multiqc [DEBUG ] No samples found: fastp [2024-02-07 14:47:37,848] multiqc.modules.fastqc.fastqc [INFO ] Found 50 reports [2024-02-07 14:47:39,000] multiqc [DEBUG ] No samples found: pycoqc [2024-02-07 14:47:39,006] multiqc [DEBUG ] No samples found: minionqc [2024-02-07 14:47:39,011] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-02-07 14:47:39,017] multiqc [DEBUG ] No samples found: clusterflow [2024-02-07 14:47:39,027] multiqc [DEBUG ] No samples found: bcl2fastq [2024-02-07 14:47:39,034] multiqc [DEBUG ] No samples found: interop [2024-02-07 14:47:39,049] multiqc [DEBUG ] No samples found: ivar [2024-02-07 14:47:39,057] multiqc [DEBUG ] No samples found: flash [2024-02-07 14:47:39,063] multiqc [DEBUG ] No samples found: seqyclean [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,063] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-02-07 14:47:39,064] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-02-07 14:47:39,123] multiqc [INFO ] Compressing plot data [2024-02-07 14:47:39,906] multiqc [INFO ] Report : multiqc_report.html [2024-02-07 14:47:39,906] multiqc [INFO ] Data : multiqc_data [2024-02-07 14:47:39,906] multiqc [DEBUG ] Moving data file from '/state/partition1/job-42695306/tmpoq7c8pfy/multiqc_data' to '/vast/gencore/GENEFLOW/work/a0/962760287d1240869947f43fd188fe/1/multiqc_data' [2024-02-07 14:47:40,267] multiqc [INFO ] MultiQC complete