FastQCFastQC Report
Wed 7 Feb 2024
000000000-LFHWK_l01_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LFHWK_l01_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1059889
Sequences flagged as poor quality0
Sequence length80
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG23130.2182303995984485No Hit
GTAACAGGATTAGATACCCGGTTCAGAAGGACTGTCTCTTATACACATCT15160.14303384599708083No Hit
GTAACCGGATTAGATACCCGGTTCAGAAGGACTGTCTCTTATACACATCT15000.14152425395489526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)