[2024-01-29 03:12:16,785] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-01-29 03:12:16,785] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-01-29 03:12:16,786] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-01-29 03:12:16,788] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-01-29 03:12:16,788] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-01-29 03:12:16,789] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-01-29 03:12:17,415] multiqc [WARNING] MultiQC Version v1.19 now available! [2024-01-29 03:12:17,415] multiqc [INFO ] This is MultiQC v1.9 [2024-01-29 03:12:17,415] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-01-29 03:12:17,416] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/c9/97700ac9e03026d1d9eaf0adfe2445/1 [2024-01-29 03:12:17,416] multiqc [INFO ] Template : default [2024-01-29 03:12:17,416] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-01-29 03:12:17,416] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/c9/97700ac9e03026d1d9eaf0adfe2445/1 [2024-01-29 03:12:17,416] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-01-29 03:12:17,416] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-42371073/tmp1znx7i5u [2024-01-29 03:12:17,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_GyrBATH10_fastqc.html [2024-01-29 03:12:17,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_GyrBATH10_fastqc.html [2024-01-29 03:12:17,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2024-01-29 03:13:36,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_ITSChi394_fastqc.html [2024-01-29 03:13:36,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_ITSChi394_fastqc.html [2024-01-29 03:13:36,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_ITSChi395_fastqc.html [2024-01-29 03:13:36,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_ITSChi395_fastqc.html [2024-01-29 03:13:36,913] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n01_ITSChi395_fastqc.html [2024-01-29 03:13:36,913] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 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03:15:16,760] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSChi383_fastqc.html [2024-01-29 03:15:16,760] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSChi383_fastqc.html [2024-01-29 03:15:16,760] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSChi383_fastqc.html [2024-01-29 03:15:16,760] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSChi383_fastqc.html [2024-01-29 03:15:16,760] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSChi383_fastqc.html [2024-01-29 03:15:16,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2024-01-29 03:15:38,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,176] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve878_fastqc.html [2024-01-29 03:15:38,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve879_fastqc.html [2024-01-29 03:15:38,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,395] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,395] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,395] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,395] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve880_fastqc.html [2024-01-29 03:15:38,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve881_fastqc.html [2024-01-29 03:15:38,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve884_fastqc.html [2024-01-29 03:15:38,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:38,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve885_fastqc.html [2024-01-29 03:15:39,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve886_fastqc.html [2024-01-29 03:15:39,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve886_fastqc.html [2024-01-29 03:15:39,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,156] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve887_fastqc.html [2024-01-29 03:15:39,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve888_fastqc.html [2024-01-29 03:15:39,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve889_fastqc.html [2024-01-29 03:15:39,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve889_fastqc.html [2024-01-29 03:15:39,468] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,476] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,476] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,476] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,476] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,476] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve890_fastqc.html [2024-01-29 03:15:39,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve913_fastqc.html [2024-01-29 03:15:39,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve913_fastqc.html [2024-01-29 03:15:39,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve914_fastqc.html [2024-01-29 03:15:39,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve915_fastqc.html [2024-01-29 03:15:39,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve915_fastqc.html [2024-01-29 03:15:39,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve916_fastqc.html [2024-01-29 03:15:39,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_ITSDve916_fastqc.html [2024-01-29 03:15:40,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_undetermined_fastqc.html [2024-01-29 03:15:40,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-LDHC6_l01_n02_undetermined_fastqc.html [2024-01-29 03:15:40,792] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-01-29 03:15:40,795] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-01-29 03:15:40,817] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 919 samples [2024-01-29 03:15:40,821] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 919 samples (table) [2024-01-29 03:15:40,824] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-01-29 03:15:40,835] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-01-29 03:15:40,841] multiqc [DEBUG ] No samples found: conpair [2024-01-29 03:15:40,847] multiqc [DEBUG ] No samples found: peddy [2024-01-29 03:15:40,853] multiqc [DEBUG ] No samples found: somalier [2024-01-29 03:15:40,859] multiqc [DEBUG ] No samples found: methylQA [2024-01-29 03:15:40,870] multiqc [DEBUG ] No samples found: mosdepth [2024-01-29 03:15:40,875] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-01-29 03:15:40,880] multiqc [DEBUG ] No samples found: qualimap [2024-01-29 03:15:40,886] multiqc [DEBUG ] No samples found: preseq [2024-01-29 03:15:40,892] multiqc [DEBUG ] No samples found: quast [2024-01-29 03:15:40,898] multiqc [DEBUG ] No samples found: qorts [2024-01-29 03:15:40,903] multiqc [DEBUG ] No samples found: rna_seqc [2024-01-29 03:15:40,909] multiqc [DEBUG ] No samples found: rockhopper [2024-01-29 03:15:40,916] multiqc [DEBUG ] No samples found: rsem [2024-01-29 03:15:40,930] multiqc [DEBUG ] No samples found: rseqc [2024-01-29 03:15:40,936] multiqc [DEBUG ] No samples found: busco [2024-01-29 03:15:40,942] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-01-29 03:15:40,948] multiqc [DEBUG ] No samples found: disambiguate [2024-01-29 03:15:40,954] multiqc [DEBUG ] No samples found: supernova [2024-01-29 03:15:40,973] multiqc [DEBUG ] No samples found: deeptools [2024-01-29 03:15:40,979] multiqc [DEBUG ] No samples found: sargasso [2024-01-29 03:15:40,985] multiqc [DEBUG ] No samples found: verifybamid [2024-01-29 03:15:40,991] multiqc [DEBUG ] No samples found: mirtrace [2024-01-29 03:15:40,997] multiqc [DEBUG ] No samples found: happy [2024-01-29 03:15:41,003] multiqc [DEBUG ] No samples found: mirtop [2024-01-29 03:15:41,011] multiqc [DEBUG ] No samples found: homer [2024-01-29 03:15:41,017] multiqc [DEBUG ] No samples found: macs2 [2024-01-29 03:15:41,022] multiqc [DEBUG ] No samples found: theta2 [2024-01-29 03:15:41,028] multiqc [DEBUG ] No samples found: snpeff [2024-01-29 03:15:41,037] multiqc [DEBUG ] No samples found: gatk [2024-01-29 03:15:41,043] multiqc [DEBUG ] No samples found: htseq [2024-01-29 03:15:41,050] multiqc [DEBUG ] No samples found: bcftools [2024-01-29 03:15:41,056] multiqc [DEBUG ] No samples found: featureCounts [2024-01-29 03:15:41,065] multiqc [DEBUG ] No samples found: fgbio [2024-01-29 03:15:41,082] multiqc [DEBUG ] No samples found: dragen [2024-01-29 03:15:41,088] multiqc [DEBUG ] No samples found: dedup [2024-01-29 03:15:41,094] multiqc [DEBUG ] No samples found: damageprofiler [2024-01-29 03:15:41,123] multiqc [DEBUG ] No samples found: biobambam2 [2024-01-29 03:15:41,128] multiqc [DEBUG ] No samples found: mtnucratio [2024-01-29 03:15:41,130] multiqc [DEBUG ] No samples found: picard [2024-01-29 03:15:41,136] multiqc [DEBUG ] No samples found: prokka [2024-01-29 03:15:41,142] multiqc [DEBUG ] No samples found: samblaster [2024-01-29 03:15:41,161] multiqc [DEBUG ] No samples found: samtools [2024-01-29 03:15:41,167] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-01-29 03:15:41,178] multiqc [DEBUG ] No samples found: bamtools [2024-01-29 03:15:41,190] multiqc [DEBUG ] No samples found: jellyfish [2024-01-29 03:15:41,213] multiqc [DEBUG ] No samples found: vcftools [2024-01-29 03:15:41,220] multiqc [DEBUG ] No samples found: longranger [2024-01-29 03:15:41,226] multiqc [DEBUG ] No samples found: stacks [2024-01-29 03:15:41,239] multiqc [DEBUG ] No samples found: varscan2 [2024-01-29 03:15:41,262] multiqc [DEBUG ] No samples found: bbmap [2024-01-29 03:15:41,268] multiqc [DEBUG ] No samples found: bismark [2024-01-29 03:15:41,275] multiqc [DEBUG ] No samples found: biscuit [2024-01-29 03:15:41,280] multiqc [DEBUG ] No samples found: hicexplorer [2024-01-29 03:15:41,286] multiqc [DEBUG ] No samples found: hicup [2024-01-29 03:15:41,292] multiqc [DEBUG ] No samples found: hicpro [2024-01-29 03:15:41,298] multiqc [DEBUG ] No samples found: salmon [2024-01-29 03:15:41,304] multiqc [DEBUG ] No samples found: kallisto [2024-01-29 03:15:41,310] multiqc [DEBUG ] No samples found: slamdunk [2024-01-29 03:15:41,315] multiqc [DEBUG ] No samples found: star [2024-01-29 03:15:41,321] multiqc [DEBUG ] No samples found: hisat2 [2024-01-29 03:15:41,327] multiqc [DEBUG ] No samples found: tophat [2024-01-29 03:15:41,334] multiqc [DEBUG ] No samples found: bowtie2 [2024-01-29 03:15:41,339] multiqc [DEBUG ] No samples found: bowtie1 [2024-01-29 03:15:41,345] multiqc [DEBUG ] No samples found: snpsplit [2024-01-29 03:15:41,350] multiqc [DEBUG ] No samples found: kat [2024-01-29 03:15:41,356] multiqc [DEBUG ] No samples found: leehom [2024-01-29 03:15:41,362] multiqc [DEBUG ] No samples found: adapterRemoval [2024-01-29 03:15:41,367] multiqc [DEBUG ] No samples found: clipandmerge [2024-01-29 03:15:41,372] multiqc [DEBUG ] No samples found: cutadapt [2024-01-29 03:15:41,378] multiqc [DEBUG ] No samples found: flexbar [2024-01-29 03:15:41,383] multiqc [DEBUG ] No samples found: kaiju [2024-01-29 03:15:41,389] multiqc [DEBUG ] No samples found: kraken [2024-01-29 03:15:41,394] multiqc [DEBUG ] No samples found: malt [2024-01-29 03:15:41,400] multiqc [DEBUG ] No samples found: trimmomatic [2024-01-29 03:15:41,406] multiqc [DEBUG ] No samples found: sickle [2024-01-29 03:15:41,412] multiqc [DEBUG ] No samples found: skewer [2024-01-29 03:15:41,417] multiqc [DEBUG ] No samples found: sortmerna [2024-01-29 03:15:41,422] multiqc [DEBUG ] No samples found: biobloomtools [2024-01-29 03:15:41,428] multiqc [DEBUG ] No samples found: fastq_screen [2024-01-29 03:15:41,434] multiqc [DEBUG ] No samples found: afterqc [2024-01-29 03:15:41,440] multiqc [DEBUG ] No samples found: fastp [2024-01-29 03:16:09,157] multiqc.modules.fastqc.fastqc [INFO ] Found 1838 reports [2024-01-29 03:18:51,965] multiqc [DEBUG ] No samples found: pycoqc [2024-01-29 03:18:51,971] multiqc [DEBUG ] No samples found: minionqc [2024-01-29 03:18:51,979] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-01-29 03:18:51,987] multiqc [DEBUG ] No samples found: clusterflow [2024-01-29 03:18:51,994] multiqc [DEBUG ] No samples found: bcl2fastq [2024-01-29 03:18:52,001] multiqc [DEBUG ] No samples found: interop [2024-01-29 03:18:52,009] multiqc [DEBUG ] No samples found: ivar [2024-01-29 03:18:52,017] multiqc [DEBUG ] No samples found: flash [2024-01-29 03:18:52,023] multiqc [DEBUG ] No samples found: seqyclean [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-01-29 03:18:52,024] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-01-29 03:18:52,025] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-01-29 03:18:52,040] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 1838 samples [2024-01-29 03:18:52,050] multiqc [INFO ] Compressing plot data [2024-01-29 03:18:53,246] multiqc [INFO ] Report : multiqc_report.html [2024-01-29 03:18:53,246] multiqc [INFO ] Data : multiqc_data [2024-01-29 03:18:53,246] multiqc [DEBUG ] Moving data file from '/state/partition1/job-42371073/tmp1znx7i5u/multiqc_data' to '/vast/gencore/GENEFLOW/work/c9/97700ac9e03026d1d9eaf0adfe2445/1/multiqc_data' [2024-01-29 03:18:53,811] multiqc [INFO ] MultiQC complete