FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve544.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve544.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10180
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT596058.546168958742626No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT149714.705304518664047No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT4224.145383104125737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT2062.0235756385068764No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1251.2278978388998034No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT1111.0903732809430255No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCAAAAGT590.5795677799607072No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAGGT330.3241650294695481No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT320.3143418467583497No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCGTTGTTGAAAGT320.3143418467583497No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCGTTGTTGAAAGT290.28487229862475444No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTTAAAGT280.275049115913556No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGGAAGT280.275049115913556No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCGTTGTTGAAAGT270.26522593320235754No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTCGTTGAAAGT240.2357563850687623No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCTGTTGTTGAAAGT240.2357563850687623No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAGAGT230.22593320235756387No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT220.21611001964636545No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTGAAAGT200.19646365422396855No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTGAAAGT190.18664047151277013No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAGTTGTTGAAAGT190.18664047151277013No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTCGAAAGT190.18664047151277013No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAATAGATCCGTTGTTGAAAGT180.17681728880157171No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTGAAAGT180.17681728880157171No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCGTTGTTGAAAGT180.17681728880157171No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCGTTGTTGAAAGT170.1669941060903733No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGCTGTTGAAAGT170.1669941060903733No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGATATCCGTTGTTGAAAGT170.1669941060903733No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACGTTGTTGAAAGT170.1669941060903733No Hit
CGGCTGCGTTCTTAATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT160.15717092337917485No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTTAAAGT150.14734774066797643No Hit
CGGCTGCGTTCTTCATCGATGCCATAGCCAAGAGATCCGTTGTTGAAAGT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGC130.12770137524557956No Hit
CGGCTGCGCTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCGTTGTTGAAAGT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGTGCCAGAGCCAAGAGATCCGTTGTTGAAAGTT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT130.12770137524557956No Hit
CGGCTGCGTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGTT130.12770137524557956No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT120.11787819253438114No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT120.11787819253438114No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT120.11787819253438114No Hit
CTGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT110.10805500982318272No Hit
CGGCTGCGTTCTTCATCGATGCCAAAGCCAAGAGATCCGTTGTTGAAAGT110.10805500982318272No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGTCAAGAGATCCGTTGTTGAAAGT110.10805500982318272No Hit
CGGCTGCGTTCTTCATCGATGTCAGAGCCAAGAGATCCGTTGTTGAAAGT110.10805500982318272No Hit
AGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT110.10805500982318272No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT110.10805500982318272No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)