FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve543.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve543.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2345
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT111747.633262260127935No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT30613.049040511727078No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT1114.733475479744136No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1044.434968017057569No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT733.113006396588486No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT592.5159914712153517No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT361.535181236673774No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT361.535181236673774No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTTAAAGT251.0660980810234542No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGC140.5970149253731344No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT140.5970149253731344No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT90.3837953091684435No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAGTTGTTGAAAGT90.3837953091684435No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAGAGT80.3411513859275053No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT70.2985074626865672No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGCTGTTGAAAGT70.2985074626865672No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCGTTGTTGAAAGT60.255863539445629No Hit
TGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT60.255863539445629No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTCGAAAGT60.255863539445629No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTGAAAGT60.255863539445629No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC50.21321961620469082No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCGTTGTTGAAAGT50.21321961620469082No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCGTTGTTGAAAGT50.21321961620469082No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACGTTGTTGAAAGT50.21321961620469082No Hit
CGGCCGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT50.21321961620469082No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCGTTGTTGAAAGT50.21321961620469082No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCAGTTGTTGAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCGTTGTTGAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTGAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCGTTGTTGAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCTAGAGATCCGTTGTCAAAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGGAAGT40.17057569296375266No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CAGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGAGCCAGAGCCAAGAGATCCGTTGTTGAAAGTT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAGGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGGTCCGTTGTTAAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTATTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCTAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCAGAGCCAAGAGATCCGTTGTTGAAAGTT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGAGCCAGAACCAAGAGATCCGTTGTTGAAAGTT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGTAAGT30.1279317697228145No Hit
CGGCTGCGTTCCTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit
CGGTTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT30.1279317697228145No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)