FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve529.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve529.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5712
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT173030.287114845938373No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT78713.778011204481794No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT65911.537114845938376No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT60310.556722689075631No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT4497.860644257703081No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT1071.873249299719888No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT1051.8382352941176472No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT831.4530812324929971No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT711.2429971988795518No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCTAGAGATCCATTGTTATAAGT300.5252100840336135No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC250.4376750700280112No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT240.42016806722689076No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT190.3326330532212885No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT170.2976190476190476No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT140.24509803921568626No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAAATCCGTTGCTGAAAGT110.19257703081232494No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT110.19257703081232494No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT100.1750700280112045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT100.1750700280112045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT100.1750700280112045No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT90.15756302521008403No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT90.15756302521008403No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCAGTTGTTGAAAGT80.1400560224089636No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT80.1400560224089636No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATACGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT70.12254901960784313No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT60.10504201680672269No Hit
CGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTT60.10504201680672269No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT60.10504201680672269No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT60.10504201680672269No Hit
CGGCTGCGTTCTTCATCGATGCCAAAACCAAGAGATCCGTTGTTGAAAGT60.10504201680672269No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)