FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve512.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve512.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10140
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT501449.447731755424066No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT111410.986193293885602No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT110710.91715976331361No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT3543.4911242603550297No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT3053.007889546351085No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT1911.883629191321499No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT1781.7554240631163707No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1441.4201183431952662No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT300.2958579881656805No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT280.27613412228796846No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT270.2662721893491124No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT260.2564102564102564No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT250.2465483234714004No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT230.22682445759368836No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGGTCCGTTGTTGAAAGT230.22682445759368836No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT220.21696252465483234No Hit
CGGCTGCGTTCTTAATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT220.21696252465483234No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTCGAAAGT200.19723865877712032No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCTGAAAGT200.19723865877712032No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAGGAGATCCGTTGTTGAAAGT200.19723865877712032No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATACGTTGTTGAAAGT200.19723865877712032No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAGAGT200.19723865877712032No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT190.18737672583826429No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGC190.18737672583826429No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCAGTTGTTGAAAGT180.17751479289940827No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTCGTTGAAAGT170.16765285996055226No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT160.15779092702169625No Hit
CGGCTGCGTTCTTCATCGATGCGCAGGCCAAGAGATCCGTTGTTGAAAGT160.15779092702169625No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGCTGTTGAAAGT150.14792899408284024No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAAATCCGTTGCTGAAAGT140.13806706114398423No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCTGTTGTTGAAAGT130.1282051282051282No Hit
CGGCTGCGTTCTTCATCGTGCGCAAGCCAAGAGATCCGTTGTTGAAAGTT130.1282051282051282No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGACCCGTTGTTGAAAGT130.1282051282051282No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCAAAGAGATCCGTTGTTGAAAGT120.1183431952662722No Hit
TGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT120.1183431952662722No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)