FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve492.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve492.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Sequences flagged as poor quality0
Sequence length301
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT4260.0No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT45.714285714285714No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT45.714285714285714No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT22.857142857142857No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT22.857142857142857No Hit
CGGCTGCGGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAG11.4285714285714286No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT11.4285714285714286No Hit
AGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT11.4285714285714286No Hit
ACTCCGTGCAGACAGCCCGACACCTTGTACGAGTTGTCGTCGAACTTACC11.4285714285714286No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC11.4285714285714286No Hit
ACCCCATGCAGGCCGCCTGACGTCTCGTAGACCTTCGAATCGAACTTTCC11.4285714285714286No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTGAAAGT11.4285714285714286No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGTCAGTTAACACCCAAACTTT11.4285714285714286No Hit
ACTCCGTGCAATCCTCCGGAGACCTTGTAGGAGTTCTGGTCGAACTTTCC11.4285714285714286No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACT11.4285714285714286No Hit
ACGCCATGCAGACCGCCAGAGACCTTGTAGGCGTTCTCGTCCGAGGTGTT11.4285714285714286No Hit
CGGCTGCGTTCTTCATCGATGCCCAAGCCAAGAGATCCGTTGTTGAAAGT11.4285714285714286No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATACGTTGTTGAAAGT11.4285714285714286No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCTAGAGATCCGTTGTTGAAAGT11.4285714285714286No Hit
ACGCCGTGGAGTCCGCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT11.4285714285714286No Hit
ACACCGTGGAGGCCGCCCGAGGTCTCGTAGACCTTCGAATCGAACTTTCC11.4285714285714286No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)