FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSDve481.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSDve481.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6428
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT254939.65463596764157No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT65910.252022401991288No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT6239.691972619788427No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT5238.13627878033603No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT4386.813939016801493No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT2343.6403235843186064No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT1662.582451773490977No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT1221.8979464841319227No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT570.8867454884878655No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT320.49782202862476665No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT180.28002489110143125No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAGGT160.24891101431238333No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGTTGAAAGT150.23335407591785934No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTGAAAGT140.21779713752333543No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT130.20224019912881147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGACCCGTTGTTGAAAGT130.20224019912881147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAGGAGATCCGTTGTTGAAAGT130.20224019912881147No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAAATCCGTTGCTGAAAGT120.18668326073428748No Hit
CGGCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTGAAAGT120.18668326073428748No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTGAAAGT120.18668326073428748No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTAAAAGT110.17112632233976355No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT100.1555693839452396No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCAAAGAGATCCGTTGTTGAAAGT100.1555693839452396No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTGAAAGT100.1555693839452396No Hit
AGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT90.14001244555071563No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCAGTTGTTGAAAGT80.12445550715619166No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGTCAAGAGATCCGTTGTTGAAAGT80.12445550715619166No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATACGTTGTTGAAAGT80.12445550715619166No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTGAAAGT80.12445550715619166No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT70.10889856876166772No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTGAAAGT70.10889856876166772No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGGAAGT70.10889856876166772No Hit
CGGCTGCGTTCTTCATCGATGCGATAGCCAAGAGATCCGTTGTTGAAAGT70.10889856876166772No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT70.10889856876166772No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)