FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi473.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi473.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1793
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT40122.364751812604574No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT37320.803123257110986No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC36920.580033463469046No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAGCGGCTGCGTTACTTCC1307.2504182933630785No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT392.1751254880089235No Hit
CGGCTGCGTTCTTCATCGATGCCGACGATTACTTCCTCTAAATGACCAAG341.8962632459564976No Hit
CGGCTGCGTTCTTCATCGATGCGAGATTACTTCCTCTAAATGACCAAGCC211.1712214166201895No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC211.1712214166201895No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT140.7808142777467931No Hit
CGGCTGCGTTCTTCATCGATGCTTACTTCCTCTAAATGACCAAGCCCTGT70.39040713887339656No Hit
CGGCTGCGTTCTTCATCGATGCTGCTTACTTCCTCTAAATGACCAAGCCC70.39040713887339656No Hit
CGGCTGCGTTCTTCATCGATGCGAGATACTTCCTCTAAATGACCAAGCCC70.39040713887339656No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT70.39040713887339656No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT60.33463469046291133No Hit
CGGCTGCGTTCTTCATCGATGCGGGTTACTTCCTCTAAATGACCAAGCCC50.2788622420524261No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGACCCGTTGTTAAAAGT50.2788622420524261No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAGCGGCTGCGTTCTTCAT50.2788622420524261No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT50.2788622420524261No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT50.2788622420524261No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAACGGCTGCGTTACTTCC40.2230897936419409No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT40.2230897936419409No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGC40.2230897936419409No Hit
CGGCTGCGTTTTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT40.2230897936419409No Hit
CGGCTGCGTTCTTCATAGATGCGAGTTACTTCCTCTAAATGACCAAGCCC40.2230897936419409No Hit
CGGCTGCGTTACTTCCTCTAAATGACCAAGCCCTGTCTCTTATACACATC30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCAGTTGTTAAAAGT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCTAGTTACTTCCTCTAAATGACCAAGCCC30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAATGACCAAGCCCT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACAAAGCCC30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGTGATCCGTTGTTAAAAGT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT30.16731734523145567No Hit
CGGCTGCGTTCTTCATCGATGCTGGGGCCAAGAGATCCGTTGTTAAAAGT30.16731734523145567No Hit
CGGCTGCGTTCTTTATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC30.16731734523145567No Hit
CGGCTGCGTTCTTCATGCTGCCAGAACCAAGAGATCCGTTGTTGAAAGTT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAGCGGCTGCGTTACTTTC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAGAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTAATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCACCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTACTCTAAATGACCAAGCCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCATTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGCTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAAATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGA20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAGGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGCTTACTTCCTCTAAATGACCAAGTCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGAGAGTTACTTCCTCTAAATGACCAAGCCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGGTCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCGTCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGTT20.11154489682097045No Hit
CGGCTGCGTTCTTCATAGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCGACGATTACTTACTCTAAATGACCAAG20.11154489682097045No Hit
CGGCTGCGTTCTTTATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTATAAATGACCAAGCCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAGAGGCTGCGTTACTTCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTATAAGAGACAGCGGCTGAGTTACTTCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCAC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCAAAGAGATCCGTTGTTAAAAGT20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGGGAGTTACTTCCTCTAAATGACCAAGCCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTATTTCCTCTAAATGACCAAGCCC20.11154489682097045No Hit
CGGCTGCGTTCTTCATCGATGCTGCGTACTTCCTCTAAATGACCAAGCCC20.11154489682097045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)