FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi472.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi472.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2183
Sequences flagged as poor quality0
Sequence length301
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT69431.79111314704535No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT60627.759963353183693No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC29813.650939074667889No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC502.2904260192395784No Hit
CGGCTGCGTTCTTCATCGATGCCGACGATTACTTCCTCTAAATGACCAAG431.9697663765460376No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT261.1910215300045808No Hit
CGGCTGCGTTCTTCATCGATGCAGTTACTTCCTCTAAATGACCAAGCCCT200.9161704076958315No Hit
CGGCTGCGTTCTTCATCGATGCGAGATACTTCCTCTAAATGACCAAGCCC150.6871278057718736No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT140.641319285387082No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT110.5038937242327073No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT80.3664681630783326No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC70.320659642693541No Hit
CGGCTGCGTTCTTCATCGATGCTGCGTACTTCCTCTAAATGACCAAGCCC70.320659642693541No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT60.2748511223087494No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT60.2748511223087494No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTAAAAGT50.22904260192395787No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT50.22904260192395787No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGGTCCGTTGTTAAAAGT50.22904260192395787No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAGGT50.22904260192395787No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTGAAAGT50.22904260192395787No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT50.22904260192395787No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT40.1832340815391663No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATTACCAAGCCC40.1832340815391663No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCGAGAGATCCGTTGTTAAAAGT40.1832340815391663No Hit
CGGCTGCGTTCTTCATCGATGCTGCTTACTTCCTCTAAATGACCAAGCCC40.1832340815391663No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT40.1832340815391663No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT40.1832340815391663No Hit
CGGCTGCGTTCTTCATCTATGCCAGAACCAAGAGATCCGTTGTTGAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAGAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT30.1374255611543747No Hit
AGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAATAGATCCGTTGTTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATAGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGGGATCCGTTGTTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGCTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGGGCCAAGAGATCCGTTGTTAAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT30.1374255611543747No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAGAAGT30.1374255611543747No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)