FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi469.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi469.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT1027.027027027027028No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT513.513513513513514No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT38.108108108108109No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT25.405405405405405No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT25.405405405405405No Hit
AGCCTAGACATCCACTGCTGAAAGTTGGTGGAAGTAAACGCAAAAACTTT12.7027027027027026No Hit
ACGCCATGAAGTCCTCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT12.7027027027027026No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGTAAAAGCAAGGACTT12.7027027027027026No Hit
ACGCCATGAAGTCCGCCCGACACCTTGTAGCCCTCGCCACCGAACTTGCC12.7027027027027026No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT12.7027027027027026No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTAAAAGT12.7027027027027026No Hit
ACTCCGTGAAAGCCTCCAGACACCTTGTAGCTGTTCTGATCGAACTTGCC12.7027027027027026No Hit
ACCCCATGTAAGCCACCCGAGACCTTGTAGCCGCCGCCGCCGAACTTGCC12.7027027027027026No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAATAGATCCGTTGTTGAAAGT12.7027027027027026No Hit
ACGCCGTGGAGACCGCCGGAGACCTTGTAACCGCCCTCGCCGAACTTGCC12.7027027027027026No Hit
CATCTGCCTTCTTCCCCTCAGCCCCCTACCAAATACCCTCGTCTCACACT12.7027027027027026No Hit
ACGCCGTGTAGGCCGCCTGAGACGTTGTAGGCCCCGCCACCAAACTTTCC12.7027027027027026No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT12.7027027027027026No Hit
ACCCCGTTGCAGTCTCCTTAGTCCTTGTATTCTCCTTGGTTGCCCTTCCC12.7027027027027026No Hit
ACACCGTGCAGGCCTCCAGAGGTCTTGTAGCCGGAGCCGCCGAACTTGCC12.7027027027027026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)