FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi466.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi466.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16473
Sequences flagged as poor quality0
Sequence length301
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT543632.99945365142961No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT346321.022278880592484No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT288717.525648030109878No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT8535.1781703393431675No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT4912.9806349784495842No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT1871.1351909184726523No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1320.801311236568931No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT760.461361014994233No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT560.33995022157469795No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT470.2853153645359072No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT330.20032780914223275No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT320.194257269471256No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT310.18818672980027926No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT310.18818672980027926No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT280.16997511078734898No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGT280.16997511078734898No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT260.15783403144539548No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT260.15783403144539548No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT250.15176349177441875No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT250.15176349177441875No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT240.145692952103442No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT240.145692952103442No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT230.13962241243246526No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC230.13962241243246526No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT230.13962241243246526No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT220.1335518727614885No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT200.121410793419535No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT200.121410793419535No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT200.121410793419535No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT200.121410793419535No Hit
CGGCTGCGTTCTTCATAGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT190.11534025374855825No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCAGTTGTTGAAAGT190.11534025374855825No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT190.11534025374855825No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT190.11534025374855825No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT180.1092697140775815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT180.1092697140775815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATACGTTGTTGAAAGT180.1092697140775815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT180.1092697140775815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT170.10319917440660474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)