FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi456.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi456.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7586
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT392451.726865278143954No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT126116.622726074347483No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT3544.66649090429739No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1972.596889006063802No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT761.0018455048774058No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT680.8963880833113631No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT650.856841550224097No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT630.8304771948325863No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT470.6195623517005009No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC440.5800158186132349No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT370.4877405747429476No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT370.4877405747429476No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAGGT280.3691009754811495No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGTTAAAAGT260.3427366200896388No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT230.3031900870023728No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAGAGT230.3031900870023728No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT200.2636435539151068No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT180.23727919852359608No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC180.23727919852359608No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT180.23727919852359608No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCAGTTGTTAAAAGT170.22409702082784078No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAGGAGATCCGTTGTTAAAAGT160.21091484313208544No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAGAAGT160.21091484313208544No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT150.19773266543633006No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATACGTTGTTAAAAGT150.19773266543633006No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTAAAAGT150.19773266543633006No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT150.19773266543633006No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT150.19773266543633006No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT140.18455048774057475No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCAAAAGT140.18455048774057475No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT140.18455048774057475No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGC130.1713683100448194No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT130.1713683100448194No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTAAAAGT120.15818613234906406No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTGAAAGT120.15818613234906406No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT120.15818613234906406No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGACCCGTTGTTAAAAGT120.15818613234906406No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTAAAAGT110.14500395465330873No Hit
CGGCTGCGTTCTTAATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT100.1318217769575534No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT100.1318217769575534No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCTGTTGTTAAAAGT100.1318217769575534No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT100.1318217769575534No Hit
CGGCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTAAAAGT100.1318217769575534No Hit
CGGCTGCGTTCTTCATCGATGCGAAAGCCAAGAGATCCGTTGTTAAAAGT90.11863959926179804No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT90.11863959926179804No Hit
AGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT90.11863959926179804No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT90.11863959926179804No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT90.11863959926179804No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT90.11863959926179804No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGTCAAGAGATCCGTTGTTAAAAGT80.10545742156604272No Hit
CGGCTGCGTTCTCCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT80.10545742156604272No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCAAAGAGATCCGTTGTTAAAAGT80.10545742156604272No Hit
CGGCTGCGTTCTTCATTGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT80.10545742156604272No Hit
CGGCTGCGTTCTTCATAGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT80.10545742156604272No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)