FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi400.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi400.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7228
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT241033.342556723851686No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT108715.038738240177087No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT85711.85666851134477No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT5627.775318206972884No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT4366.032097399003874No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT2733.776978417266187No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1341.853901494189264No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT380.5257332595462092No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT360.4980630879911455No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT250.34587714443829554No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT170.23519645821804097No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT170.23519645821804097No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT160.22136137244050913No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGCTGAAAGT150.20752628666297732No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCGTTGTTGAAAGT150.20752628666297732No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT150.20752628666297732No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT150.20752628666297732No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT130.1798561151079137No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT130.1798561151079137No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT120.16602102933038185No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACATTGTTGAAAGT120.16602102933038185No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT120.16602102933038185No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT120.16602102933038185No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTCGAAAGT110.15218594355285No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGGAAGT110.15218594355285No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGC100.1383508577753182No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCACTGTTGAAAGT90.12451577199778638No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCGTTGTTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTTAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAGGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT80.11068068622025456No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTGAAAGT80.11068068622025456No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)