FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSChi398.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSChi398.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10966
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT369133.65858106875798No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT258623.581980667517783No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT6175.6264818530001826No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT5675.170527083713296No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT5525.0337406529272295No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT3933.58380448659493No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT2772.525989421849353No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT2121.9332482217764No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT860.7842422031734452No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT380.34652562465803394No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT250.22797738464344336No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT240.21885828925770562No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT230.20973919387196788No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTAAAAGT220.20062009848623016No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGCTGAAAGT220.20062009848623016No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT220.20062009848623016No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT210.19150100310049242No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTAAAAGT210.19150100310049242No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAGGT190.17326281232901697No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGTTAAAAGT180.16414371694327923No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT180.16414371694327923No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT180.16414371694327923No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT170.1550246215575415No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT160.14590552617180375No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGACCCGTTGTTAAAAGT160.14590552617180375No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT160.14590552617180375No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTGAAAGT160.14590552617180375No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT150.13678643078606603No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT150.13678643078606603No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAGAAGT150.13678643078606603No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCAGTTGTTAAAAGT140.1276673354003283No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT140.1276673354003283No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT140.1276673354003283No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT140.1276673354003283No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT140.1276673354003283No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAGGAGATCCGTTGTTAAAAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAGAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCCAGTACCAAGAGATCCGTTGTTGAAAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGCCGAAAGT130.11854824001459056No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT120.10942914462885281No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAAATCCGTTGCTGAAAGT120.10942914462885281No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTCGAAAGT120.10942914462885281No Hit
CGGCTGCGTTCTTAATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGTCAAGAGATCCGTTGTTAAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATACGTTGTTAAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT110.10031004924311508No Hit
CGGCTGCGTTCTTCATAGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT110.10031004924311508No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)