FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC10277.27272727272727No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT21.5151515151515151No Hit
CGGCTGCGTTCTTTATCGATGCTGCCGACGATTACTTCCTCTAAATGACC21.5151515151515151No Hit
CGGCTGCGTTCTTCATCGATTCTGCCTTCGATTACTTCCTCTATATGACC10.7575757575757576No Hit
ACTCCATGTAGGCCACCCGAGACTTTGTAGCTGTTCTGGTCGAACTTGCC10.7575757575757576No Hit
TCACTTGCGGTTGGACCGAGCAAATTCGCGCGCCGCCACGACATTCCCAC10.7575757575757576No Hit
CGGTTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGACGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
TCACTTGCGGCTCGACCGAGCAAATTCGCGCGCCGCCACGACATTCCCAC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACA10.7575757575757576No Hit
CGGCCGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGACGCTGCCGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTCCCTCTAAATGACC10.7575757575757576No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATTACC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT10.7575757575757576No Hit
CGGCTGCGTTTTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACT10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT10.7575757575757576No Hit
GGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
TCACTTGCGGCTGAACTGCGCAAATTCGCGCGCCGCCACGACATTCCCAC10.7575757575757576No Hit
ACGCCATGTAGACCGCCCGACACCTTGTAGGCGTTGTCGTCCGACGTGTT10.7575757575757576No Hit
TCACTTGCGGCTCAACTGAGCAAATTCGCGCGCCGCCACGACATTCCCAC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCTGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
CGGCTGCGTTTCTTAATCGATGCTGCCGACGATTACTTCCTCTAAATGAC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCTGCAGACGATTACTTCCTCTAAATGACC10.7575757575757576No Hit
TCACTTGCGGCTGAACTGAGCAAATTCGCGCGCCGCCACGACATTCCCAC10.7575757575757576No Hit
CGGCTGCGTTCTTCATCGATGCCGGCGCCGAGTACTTCCTTTAAATGACT10.7575757575757576No Hit
ACGCCGTGAAAGCCTCCTGAGACCTTGTACGAGTTCTGGTCGAACTTGCC10.7575757575757576No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)