FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH381.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH381.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4495
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT161535.92880978865406No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT151333.65962180200223No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT2335.183537263626251No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1573.4927697441601775No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT922.046718576195773No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT430.9566184649610678No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT350.778642936596218No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCTAGAGATCCATTGTTATAAGT290.6451612903225806No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT210.46718576195773087No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT200.44493882091212456No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT180.40044493882091214No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT180.40044493882091214No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT140.3114571746384872No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTGAGAGT120.26696329254727474No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT110.2447163515016685No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT100.22246941045606228No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGGTCCGTTGTTGAAAGT90.20022246941045607No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT80.17797552836484984No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT80.17797552836484984No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT80.17797552836484984No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT80.17797552836484984No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT80.17797552836484984No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAATAGATCCATTGTTGAAAGT70.1557285873192436No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGCTGTTGAAAGT70.1557285873192436No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT70.1557285873192436No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTGAAAGT70.1557285873192436No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACATTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATAGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTCGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAATTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCACTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAGAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCTATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGACCCGTTGTTGAAAGT60.13348164627363737No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCAAAGAGATCCGTTGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGC50.11123470522803114No Hit
CGGCTGTGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATCGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCAGTTGTTGAAAGT50.11123470522803114No Hit
CGGCTGCGTTCTTAATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT50.11123470522803114No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)