FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH378.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH378.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9510
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT546057.413249211356465No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT234324.637223974763405No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT2873.017875920084122No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1241.3038906414300735No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT981.0304942166140905No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT690.725552050473186No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT620.6519453207150367No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT520.5467928496319664No Hit
CGGCTGCGTTCTTAATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT210.22082018927444794No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT200.2103049421661409No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT200.2103049421661409No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT190.19978969505783387No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAATTGTTGAAAGT190.19978969505783387No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT190.19978969505783387No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT150.15772870662460567No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT150.15772870662460567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT150.15772870662460567No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTGAAAGT150.15772870662460567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCAAAGAGATCCATTGTTGAAAGT140.14721345951629863No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT130.1366982124079916No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT130.1366982124079916No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT130.1366982124079916No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT120.12618296529968456No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACATTGTTGAAAGT120.12618296529968456No Hit
CGGCTGCGTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTT110.11566771819137749No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT110.11566771819137749No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT110.11566771819137749No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAATAGATCCATTGTTGAAAGT110.11566771819137749No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT100.10515247108307045No Hit
CGGCTGCGTTCTTCATCGATGCCATAGCCAAGAGATCCATTGTTGAAAGT100.10515247108307045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)