FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH373.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH373.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8036
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT244230.388252862120456No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT163820.38327526132404No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT112013.937282229965156No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT96912.05823792931807No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT4135.139372822299651No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT2002.4888003982080638No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT670.8337481333997013No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCCGAAAGT630.7839721254355401No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT550.6844201095072175No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT530.6595321055251369No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT380.4728720756595321No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT320.3982080637132902No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCAGAAAGT230.28621204579392734No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGCCGAAAGT130.16177202588352416No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCCGAAAGT120.14932802389248384No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGCCGAAAGT120.14932802389248384No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT110.13688402190144353No Hit
CGGCTGCGTTCTTCATAGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT100.12444001991040318No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCGAAAGT100.12444001991040318No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGCCGAAAGT100.12444001991040318No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCCGAAAGT90.11199601791936287No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCAGTTGCCGAAAGT90.11199601791936287No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT90.11199601791936287No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT90.11199601791936287No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT90.11199601791936287No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)