FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH359.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH359.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63
Sequences flagged as poor quality0
Sequence length301
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC3657.14285714285714No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC1930.158730158730158No Hit
CGGCTGCGTTTTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC11.5873015873015872No Hit
CGGCTGCGTTCTTCATCGATGCTGCAGACGATTACTTCCTCTAAATGACC11.5873015873015872No Hit
ACTCCGTGCAGGCCTCCCGACACCTTGTACGAGTTGTCGTCGAACTTACC11.5873015873015872No Hit
ACCCCGTGGAGGCCTCCCGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT11.5873015873015872No Hit
CGGCTGCGTTCTTCATCGATGCTGCTGACGACTACTACCTCTAAATGACC11.5873015873015872No Hit
CGGCTGCGTTCTTCATCGATGCGAAAGCCAAGAGATCCGTTGTTGAAAGT11.5873015873015872No Hit
AGTCCCCAACGAAATCTTCGAGCCCACGAGACTCGTAATCAGGAACATCG11.5873015873015872No Hit
AGTCCCCAACGCCATCTTCGAGTGTGAAGACCATTTTTTCTTCCTCCACT11.5873015873015872No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)