FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH357.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH357.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9143
Sequences flagged as poor quality0
Sequence length301
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGT380541.6165372416056No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT313934.33227605818659No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT2582.8218309088920486No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT2502.7343322760581863No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1571.7171606693645411No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT730.7984250246089906No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT400.43749316416930983No Hit
CGGCTGCGTTCTTCATCGATGCAGGAGCCAAGAGATCCGTTGTTAAAAGT310.33905720223121516No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT280.30624521491851686No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTGAAAGT200.21874658208465492No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGGGATCCGTTGTTGAAAGT190.2078092529804222No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGT180.19687192387618943No Hit
CGGCTGCGTTCTTCATCGATGCTGTAACCAAGAGATCCGTTGTTGAAAGT170.1859345947719567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT170.1859345947719567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT160.17499726566772394No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT160.17499726566772394No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT150.1640599365634912No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGATATCCGTTGTTGAAAGT150.1640599365634912No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGGAAGT140.15312260745925843No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGCTGTTGAAAGT140.15312260745925843No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGATATCCGTTGTTGAAAGT140.15312260745925843No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTTAAAGT140.15312260745925843No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT130.1421852783550257No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTCGTTGAAAGT130.1421852783550257No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT130.1421852783550257No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT130.1421852783550257No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGGTCCGTTGTTGAAAGT130.1421852783550257No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT120.13124794925079294No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAGGT120.13124794925079294No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCAGTTGTTGAAAGT110.1203106201465602No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGC110.1203106201465602No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT110.1203106201465602No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTTAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACT100.10937329104232746No Hit
CGGCTGCGTTCTTCATTGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAATAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CTGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCTATGCTGGAACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CTGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTCGAAAGT100.10937329104232746No Hit
CGGCTGCGTTATTCATCGATGCTGGAACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCTGGGACCAAGAGATCCGTTGTTGAAAGT100.10937329104232746No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT100.10937329104232746No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)