FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH343.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH343.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4454
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT244854.961832061068705No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT106223.84373596766951No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1393.120790300853166No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT1142.559497081275258No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT350.7858105074090704No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT270.60619667714414No Hit
CGGCCGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT170.38167938931297707No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCGTTGTTGAAAGT130.2918724741805119No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT120.26942074539739563No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCGTTGTTGAAAGT120.26942074539739563No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAGGT120.26942074539739563No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT110.2469690166142793No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAGTTGTTGAAAGT110.2469690166142793No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCGTTGTTGAAAGT110.2469690166142793No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT100.224517287831163No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTGAAAGT100.224517287831163No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCGTTGTTGAAAGT100.224517287831163No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCGTTGTTGAAAGT80.17961383026493039No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGCTGTTGAAAGT80.17961383026493039No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACGTTGTTGAAAGT80.17961383026493039No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTGAAAGT70.1571621014818141No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC70.1571621014818141No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTCGTTGAAAGT70.1571621014818141No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCGTTGTTGAAAGT70.1571621014818141No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT70.1571621014818141No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGATATCCGTTGTTGAAAGT70.1571621014818141No Hit
CGGCTGCGTTCTTCATCGATGCCATAGCCAAGAGATCCGTTGTTGAAAGT60.13471037269869782No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCGTTGTTGAAAGT60.13471037269869782No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT60.13471037269869782No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT60.13471037269869782No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCAAAGAGATCCGTTGTTGAAAGT60.13471037269869782No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT50.1122586439155815No Hit
AGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT50.1122586439155815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAATAGATCCGTTGTTGAAAGT50.1122586439155815No Hit
CGGCTGCGTTCTTTATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT50.1122586439155815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT50.1122586439155815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTTAAAGT50.1122586439155815No Hit
CGGCTGCGTTTTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT50.1122586439155815No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTCGAAAGT50.1122586439155815No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)