FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH325.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH325.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5344
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT212639.782934131736525No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT108120.228293413173652No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT4798.963323353293413No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT2624.902694610778443No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT2063.8547904191616764No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1422.657185628742515No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT1292.413922155688623No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT1051.964820359281437No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGCTGAAAGT120.2245508982035928No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT120.2245508982035928No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT110.20583832335329344No Hit
CGGCTGCGTTATTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT100.18712574850299402No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT90.16841317365269462No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT90.16841317365269462No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATACATTGTTGAAAGT90.16841317365269462No Hit
CGGCTGCGTTCTTCATTGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT80.14970059880239522No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT80.14970059880239522No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGATATCCATTGTTGAAAGT80.14970059880239522No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT70.1309880239520958No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTTAAAGT70.1309880239520958No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT70.1309880239520958No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGCTGAAAGT70.1309880239520958No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT70.1309880239520958No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGC70.1309880239520958No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT60.1122754491017964No Hit
CGGCTGTGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCGATAGCCAAGAGATCCGTTGTTAAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCAAAGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTTTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAGGAGATCCATTGTTGAAAGT60.1122754491017964No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAGAGT60.1122754491017964No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)