FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH311.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH311.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1952
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT64833.19672131147541No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT54828.07377049180328No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT1598.145491803278688No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT854.354508196721311No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT562.8688524590163933No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT452.305327868852459No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT221.1270491803278688No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCAAAAGT201.0245901639344261No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCTAGAGATCCGTTGCTAAAAGT110.5635245901639344No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT90.4610655737704918No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGCTGAAAGT80.4098360655737705No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT70.35860655737704916No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT50.25614754098360654No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT50.25614754098360654No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT50.25614754098360654No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATCGTTGAAAGT50.25614754098360654No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT50.25614754098360654No Hit
CTGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT40.20491803278688525No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGCTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT30.15368852459016394No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATAGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGCTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCTATTGTTGAAAGT30.15368852459016394No Hit
CTGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTCGTTGAAAGT30.15368852459016394No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGTT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGACGCCAGAGCCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTAATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT20.10245901639344263No Hit
CCGTCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAG20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAATAGATCCGTTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCTGGAGATCCGTTGCTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAATAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCCGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGCAGGCCAAGAGATCCGTTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGTCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAGTTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGACCCGTTGTTAAAAGT20.10245901639344263No Hit
TGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGTT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCACAAGCCAAGAGATCCGTTGTTGAAAGT20.10245901639344263No Hit
GGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGTT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCTATGCCAGAGCCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCCAGAGATCCGTTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTGAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT20.10245901639344263No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGACCCGTTGTTGAAAGT20.10245901639344263No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)