FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH308.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH308.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8206
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT358943.73629051913234No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT160719.583231781623205No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT138816.914452839385817No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT881.0723860589812333No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT630.7677309285888374No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCATTGTTGAAAGT460.5605654399220084No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT440.5361930294906166No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT300.36558615647087495No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT210.25591030952961247No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT200.24372410431391664No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGGAAGT180.21935169388252496No Hit
CGGCTGCGTTCTTCATCGATGCGCAGGCCAAGAGATCCGTTGTTGAAAGT170.20716548866682913No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTCGTTGAAAGT160.19497928345113333No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGCTGTTGAAAGT160.19497928345113333No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCAGTTGTTGAAAGT160.19497928345113333No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTCGAAAGT150.18279307823543747No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGGGATCCGTTGTTGAAAGT150.18279307823543747No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAGAGT150.18279307823543747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT140.17060687301974164No Hit
CGGCTGCGTTATTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT130.15842066780404582No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAGGAGATCCGTTGTTGAAAGT130.15842066780404582No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGC130.15842066780404582No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCGAGAGATCCGTTGTTGAAAGT130.15842066780404582No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTGAAAGT120.14623446258835No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT120.14623446258835No Hit
CGGCTGCGTTCTTCATCGATGCGCGAGCCAAGAGATCCGTTGTTAAAAGT120.14623446258835No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGACCCGTTGTTGAAAGT120.14623446258835No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGCTGAAAGT110.13404825737265416No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAGAGT110.13404825737265416No Hit
CGGCTGCGTTCTTTATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT110.13404825737265416No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGGTCCGTTGTTGAAAGT110.13404825737265416No Hit
CGGCTGCGTTCTTCATAGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT110.13404825737265416No Hit
CGGCTGCGTTCTTCATCGATGCACAAGCCAAGAGATCCGTTGTTGAAAGT110.13404825737265416No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGC100.12186205215695832No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCAGTTGTTAAAAGT100.12186205215695832No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATACGTTGTTGAAAGT100.12186205215695832No Hit
CGGCTGCGTTCTTCATCGATGCGAAAGCCAAGAGATCCGTTGTTGAAAGT100.12186205215695832No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT90.10967584694126248No Hit
CGGCTGCGTTCTTCATCTATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT90.10967584694126248No Hit
CGGCCGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT90.10967584694126248No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT90.10967584694126248No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT90.10967584694126248No Hit
CGGCTGTGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT90.10967584694126248No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT90.10967584694126248No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGC90.10967584694126248No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)