FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH305.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH305.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8778
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT282632.19412166780588No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT234126.66894508999772No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT7208.202323991797677No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT2993.4062428799270905No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT2843.2353611300979725No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT2773.15561631351105No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT2703.0758714969241283No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT961.0936431989063569No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT830.9455456823877877No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGCTAAAAGT440.5012531328320802No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCATTGTTGAAAGT320.36454773296878556No Hit
CGGCTGCGTTATTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT230.26201868307131465No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTCAAAAGT210.23923444976076555No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT200.22784233310549099No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAGGT200.22784233310549099No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGCTAAAAGT180.2050580997949419No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGCTAAAAGT170.19366598313966735No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGC160.18227386648439278No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAGGAGATCCGTTGCTAAAAGT150.17088174982911825No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCTTTGCTAAAAGT150.17088174982911825No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGCTAAAAGT140.1594896331738437No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGGTCCATTGTTGAAAGT130.14809751651856914No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTGAAAGT130.14809751651856914No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCGAGAGATCCATTGTTGAAAGT120.1367053998632946No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATACGTTGCTAAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAGAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCTGTTGCTAAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGGGATCCATTGTTGAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTGAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGCTAAAAGT110.12531328320802004No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGCTAAAAGT100.11392116655274549No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCAATTGTTGAAAGT100.11392116655274549No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGGAAGT100.11392116655274549No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGACCCATTGTTGAAAGT100.11392116655274549No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAGGT100.11392116655274549No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT90.10252904989747096No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGCTAAAAGT90.10252904989747096No Hit
CGGCTGCGTTCTTAATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT90.10252904989747096No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGCTAAAAGT90.10252904989747096No Hit
CGGCTGCGTTCTTCATCGATGCCAGGGCCAAGAGATCCATTGTTGAAAGT90.10252904989747096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)