FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH301.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH301.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3701
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT234463.334233990813296No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT1794.836530667387192No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAGGT1002.7019724398811134No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT962.5938935422858687No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT701.8913807079167793No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT661.7833018103215348No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT591.5941637395298567No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT360.9727100783572008No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT300.810591731964334No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT290.7835720075655228No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAGGT290.7835720075655228No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC220.5944339367738449No Hit
CGGCTGCGTTCTTCATCGATGCTGCCGACGATTACTTCCTCTAAATGACC220.5944339367738449No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAATAGATCCGTTGTTAAAAGT200.5403944879762227No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT180.4863550391786004No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTCGTTAAAAGT170.4593353147797892No Hit
CGGCTGCGTTCTTCATCTATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT160.4323155903809781No Hit
CGGCTGCGTTCTTCATCGATGCGTTACTTCCTCTAAATGACCAAGCCCTG140.3782761415833559No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGGGATCCGTTGTTAAAAGT140.3782761415833559No Hit
CGGCTGCGTTCTTCATCGATGCGAGGGCCAAGAGATCCGTTGTTAAAAGT130.35125641718454476No Hit
CGGCTGCGTTCTTCATCGATGCCGACGATTACTTCCTCTAAATGACCAAG130.35125641718454476No Hit
CGGCTGCGTTCTTCATCGATGCGAGATACTTCCTCTAAATGACCAAGCCC120.3242366927857336No Hit
CGGCTGCGTTCTTCATCGATGCTGGAGCCAAGAGATCCGTTGTTAAAAGT110.29721696838692246No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGACCCGTTGTTAAAAGT100.27019724398811135No Hit
CGGCTGCGTTCTTTATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT100.27019724398811135No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT80.21615779519048905No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGGTCCGTTGTTAAAAGT80.21615779519048905No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCGAGAGATCCGTTGTTAAAAGT80.21615779519048905No Hit
CGGCTGCGTTCTTCATCGATGCGGGAGCCAAGAGATCCGTTGTTAAAAGT80.21615779519048905No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAGAGT70.18913807079167794No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTAAAAGT70.18913807079167794No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT70.18913807079167794No Hit
CGGCTGCGTTCTTCATCGATGCGATAGCCAAGAGATCCGTTGTTAAAAGT70.18913807079167794No Hit
CTGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGC60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAGAAGT60.1621183463928668No Hit
CGGCTGTGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTAAAAGT60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGATATCCGTTGTTAAAAGT60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTCAAAAGT60.1621183463928668No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAGGAGATCCGTTGTTAAAAGT50.13509862199405567No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAAATCCGTTGTTAAAAGT50.13509862199405567No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGCTGTTAAAAGT50.13509862199405567No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCGTTGTTAAAAGT50.13509862199405567No Hit
CGGCTGCGTTCTTCATCGATGCAAGAGCCAAGAGATCCATTGTTAAAAGT50.13509862199405567No Hit
CGGCTGCGTTCTTAATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT40.10807889759524453No Hit
CGGCTGCGTTCTTCATCGATGCTGGAACCAAGAGATCCGTTGTTAAAAGT40.10807889759524453No Hit
CGGCTGCGTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGTT40.10807889759524453No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATTCGTTGTTAAAAGT40.10807889759524453No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT40.10807889759524453No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)