FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH300.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH300.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10289
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT687666.82865195840218No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT7967.736417533287978No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT6025.850908737486636No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1731.6814073282145983No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT880.8552823403634949No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT870.8455632228593644No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT570.5539896977354456No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT560.544270580231315No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTAAAAGT410.39848381766935564No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT280.2721352901156575No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT270.2624161726115269No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT270.2624161726115269No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT260.25269705510739626No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCAGTTGTTGAAAGT260.25269705510739626No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC260.25269705510739626No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT260.25269705510739626No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT240.23325882009913498No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT240.23325882009913498No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAATAGATCCGTTGTTGAAAGT230.22353970259500439No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT220.21382058509087373No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT210.20410146758674313No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT210.20410146758674313No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT200.1943823500826125No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATACGTTGTTGAAAGT200.1943823500826125No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT180.17494411507435126No Hit
CGGCTGCGTTCTTAATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT180.17494411507435126No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGT180.17494411507435126No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT170.16522499757022063No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT170.16522499757022063No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT170.16522499757022063No Hit
CGGCTGCGTTCTTCATAGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT160.15550588006609No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT150.14578676256195938No Hit
CGGCTGTGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT150.14578676256195938No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT140.13606764505782876No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTTAAAGT140.13606764505782876No Hit
CGGCTGCGTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGTT130.12634852755369813No Hit
CGGCTGCGTTCTTCATCGATGTCAGAACCAAGAGATCCGTTGTTGAAAGT130.12634852755369813No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT130.12634852755369813No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCTGTTGTTGAAAGT130.12634852755369813No Hit
CGGCCGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT120.11662941004956749No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT110.10691029254543687No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT110.10691029254543687No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)