FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH299.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH299.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13426
Sequences flagged as poor quality0
Sequence length301
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT958771.40622672426635No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT4923.6645315060330703No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT3202.3834351258751676No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT2621.9514375093102936No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT1240.9235811112766273No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT830.6182034857738716No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT640.47668702517503353No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT630.46923879040667366No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT570.4245493817965142No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT560.4171011470281543No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT550.40965291225979444No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGC520.38730820795471477No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTCGTTGAAAGT500.37241173841799496No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT490.36496350364963503No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT490.36496350364963503No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT440.32772232980783556No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGACCCGTTGTTGAAAGT440.32772232980783556No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT420.31282586027111575No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT410.3053776255027558No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT410.3053776255027558No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCGAGAGATCCGTTGTTGAAAGT360.26813645166095634No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGCTGTTGAAAGT360.26813645166095634No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCAGTTGTTGAAAGT360.26813645166095634No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTCGAAAGT360.26813645166095634No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT300.22344704305079696No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAATAGATCCGTTGTTGAAAGT280.20855057351407716No Hit
CGGCTGCGTTCTTCATAGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT260.19365410397735738No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT260.19365410397735738No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATACGTTGTTGAAAGT250.18620586920899748No Hit
CGGCTGCGTTCTTCATCGATGCAAGAACCAAGAGATCCGTTGTTGAAAGT230.17130939967227768No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT230.17130939967227768No Hit
CGGCTGCGTTCTTAATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT230.17130939967227768No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCTGTTGTTGAAAGT230.17130939967227768No Hit
CGGCTGTGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT210.15641293013555788No Hit
CGGCTGCGTTCTTTATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT210.15641293013555788No Hit
CGGCTGCGTTCTTCATCGATGCCGGAGCCAAGAGATCCATTGTTAAAAGT210.15641293013555788No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTTAAAGT200.14896469536719797No Hit
CGGCTGCGTTCCTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT190.14151646059883807No Hit
CGGCTGCGTTCTTCATCGATGCAGAACCAAGAGATCCGTTGTTGAAAGTT190.14151646059883807No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT180.13406822583047817No Hit
CGGCTGCGTTTTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT170.12661999106211827No Hit
TGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT170.12661999106211827No Hit
CGGCTGCGTTCTTCATCGATGTCAGAACCAAGAGATCCGTTGTTGAAAGT160.11917175629375838No Hit
AGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT160.11917175629375838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT150.11172352152539848No Hit
CGGCTGCGCTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT150.11172352152539848No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACTAAGAGATCCGTTGTTGAAAGT150.11172352152539848No Hit
CGGCTGCGTTCTTCATCTATGCCAGAACCAAGAGATCCGTTGTTGAAAGT150.11172352152539848No Hit
CTGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT150.11172352152539848No Hit
CGGCTGCGTTCTTCATCGATGCCAAAACCAAGAGATCCGTTGTTGAAAGT150.11172352152539848No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)