FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH292.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH292.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7729
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT297938.543149178418936No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT269534.86867641350757No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTAAAAGT4445.744598266269892No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT2162.7946694268340018No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT1091.4102729978004915No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT600.776297063009445No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT580.7504204942424635No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTGAAAGT570.7374822098589727No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT320.4140251002717039No Hit
CGGCTGCGTTCTTCATCGATGCTAGAGCCAAGAGATCCGTTGTTAAAAGT210.2717039720533057No Hit
CGGCTGCGTTCTTCATCGATGCTATAACCAAGAGATCCGTTGTTAAAAGT170.21995083451934275No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACAAAGAGATCCGTTGTTAAAAGT160.20701255013585196No Hit
CGGCTGCGTTATTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT160.20701255013585196No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTAAAAGT160.20701255013585196No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT140.1811359813688705No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAATAGATCCGTTGTTAAAAGT130.16819769698537976No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAGGT130.16819769698537976No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT130.16819769698537976No Hit
CGGCTGCGTTCTTCATCGATGCTAGGACCAAGAGATCCGTTGTTAAAAGT120.15525941260188897No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGGTCCGTTGTTAAAAGT120.15525941260188897No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGGGATCCGTTGTTAAAAGT120.15525941260188897No Hit
CGGCTGCGTTCTTAATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT110.14232112821839824No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAGGT110.14232112821839824No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATCAGTTGTTAAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCTGAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAGGAGATCCGTTGTTAAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGGGATCCGTTGTTGAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATCGATGCCAGGACCAAGAGATCCGTTGTTGAAAGT100.12938284383490747No Hit
CGGCTGCGTTCTTCATAGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT90.11644455945141674No Hit
CGGCTGCGTTCTTAATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT90.11644455945141674No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGCTGAAAGT90.11644455945141674No Hit
CGGCTGCGTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGTT80.10350627506792598No Hit
CGGCTGCGCTCTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT80.10350627506792598No Hit
CGGCTGCGTTCTTCATCGATGCCATAACCAAGAGATCCGTTGTTGAAAGT80.10350627506792598No Hit
CGGCTGCGTTCTTCATCGATGCCGGAACCAAGAGATCCGTTGTTGAAAGT80.10350627506792598No Hit
CGGCTGCGTTTTTCATCGATGCTAGAACCAAGAGATCCGTTGTTAAAAGT80.10350627506792598No Hit
CAGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT80.10350627506792598No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGCCGAAAGT80.10350627506792598No Hit
CGGCTGCGTTCTTCATCGATGCTAGAACCAAGAGATACGTTGTTAAAAGT80.10350627506792598No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)