FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITSATH291.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITSATH291.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT9951.832460732984295No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCC5327.748691099476442No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT31.5706806282722512No Hit
CGGCTGCGTTCTTCATCGATGCGAGATTACTTCCTCTAAATGACCAAGCC31.5706806282722512No Hit
CGGCTGCGTTCTTCATCGATGCCAAAACCAAGAGATCCGTTGTTGAAAGT21.0471204188481675No Hit
CGGCTGCGTTATTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT21.0471204188481675No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACAAAGAGATCCGTTGTTGAAAGT21.0471204188481675No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGGTCCGTTGTTGAAAGT21.0471204188481675No Hit
CGGCTGCGTTTTCATCGCTGCGAGTTACTTCCTCTAAATGACCAAGCCCT10.5235602094240838No Hit
CGGCTGAGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTACTCTAAATGACCAAGCCC10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGCAAGT10.5235602094240838No Hit
CTCTTTCCATCCCCTTCCATGCGAGATCTCTCTCATGCGACGCTCTCCGG10.5235602094240838No Hit
GGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATGACCAAGCCCT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAGGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATAGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAGGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCGAGTTACTTCCTCTAAATAACCAAGCCC10.5235602094240838No Hit
AGTCCCCAACGAAATCTTCGAGTGTGAAGACCATTTTTTCTTCCTCCACT10.5235602094240838No Hit
CGACTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCCGCGTTCTTCATCGATGCGAGATTACTTCCTCTAAATGACCAAGCC10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGTTGCCATTACCCATTTATCCGTTGTTGTTAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGGTGCCAGAACCAATAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCTTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCGTCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCAGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGGAAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAGAGT10.5235602094240838No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGATATCCGTTGTTGAAAGT10.5235602094240838No Hit
ACGCCGTGTAGTCCTCCCGAGGTGACGTAGTTCGAGCCGTCGAACTTGCC10.5235602094240838No Hit
CCGCCGCGTCCATCATCGATGCCAGCACCCAGACATCCGTCCCCCAAAGC10.5235602094240838No Hit
ACCCCGTGTAGTCCGCCCGAGACCTTGTAGGAATTCTGGTCGAACTTACC10.5235602094240838No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)