FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve845.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve845.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1630
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC93757.484662576687114No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC1348.220858895705522No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT935.705521472392638No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC925.644171779141105No Hit
AGCCTAGACATCCACTGCTGCCGACGGTGGTAATGATCCTTCCGCTGTCT382.331288343558282No Hit
AGCCTAGACATCCACTGCTGCAGTGGTAATGATCCTTCCGCTGTCTCTTA321.96319018404908No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC60.36809815950920244No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGAATAAAAGCAGAGAC60.36809815950920244No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTACTTTAGTTAAGAACATGAATT60.36809815950920244No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGAATAAAAGCAGAGAC50.3067484662576687No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAATAAAAGCAGAGAC50.3067484662576687No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC50.3067484662576687No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGCAGAGAC50.3067484662576687No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGCAGAGAC40.245398773006135No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGAATAAAAGCAGAGAC40.245398773006135No Hit
AGCCTAGACATCCACTGCTGGGCTCGTGGTAATGATCCTTCCGCTGTCTC40.245398773006135No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGCAGAGAC40.245398773006135No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGGGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATGAAAGCAGAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGAATAAAAGCAGAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCGGAGAC30.18404907975460122No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTTTCATTATATTATATAAACA30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGGTATCGTGGTAATGATCCTTCCGCTGTCTC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAAAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGCAGAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCCGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.18404907975460122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTAT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTACGCTGTC20.1226993865030675No Hit
AGCCTAGACATCCACTGCGGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTTGTAATGATCCTTCCGCTGTC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTTCGCTGTCTCT20.1226993865030675No Hit
AGCATAGACATCCACTGCTGCCGACGGTGGTAATGATCCTTCCGCTGTCT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGGCGACGAGTGGTAATGATCCTTCCGCTGTC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGTTGTCTC20.1226993865030675No Hit
AGCCTAGACATACACTGCTGAAAGTTGTACTTTAGTTAAGAACATGAACT20.1226993865030675No Hit
AGACTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCAACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATACTTCCGCTGTC20.1226993865030675No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGTCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGACTTT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTATGATCCTTCCGCTGTCTCT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGCCGAAGGTGGTAATGATCCTTCCGCTGTCT20.1226993865030675No Hit
AGCCTAGACATCCACTGTTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCATAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGATGCCGACGAGTGGTAATGATCCTTCCGCTGTC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCATTCCGCTGTCTCT20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGATATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGCCGACGTGTGGTAATGATCCTTCCGCTGTC20.1226993865030675No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGCAGAGAC20.1226993865030675No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)