FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve840.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve840.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5840
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC177530.39383561643836No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT108818.63013698630137No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTTGGGTTAAAACCAAAGACTT80713.818493150684933No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT1873.202054794520548No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT1402.3972602739726026No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT1332.2773972602739727No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC1091.8664383561643836No Hit
AGCCTAGACATCCACTGCTGGTGGGTGAGTGGTAATGATCCTTCCGCTGT841.4383561643835616No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGCTCGAGATGTGGTAATGATCC580.9931506849315069No Hit
AGCCTAGACATCCACTGCTGACGACGAGTGGTAATGATCCTTCCGCTGTC520.8904109589041096No Hit
AGCCTAGACATCCACTGCTGCCGACGATGTGGTAATGATCCTTCCGCTGT460.7876712328767124No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA460.7876712328767124No Hit
AGCCTAGACATCCACTGCTGGGTCTCTGGGCTCGGAGATGTGGTAATGAT360.6164383561643836No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT350.5993150684931506No Hit
AGCCTAGACATCCACTGCTGAAAGTTATTATTGATTAAACAGACGACTTT330.565068493150685No Hit
AGCCTAGACATCCACTGCTGACGATGTGGTAATGATCCTTCCGCTGTCTC290.49657534246575347No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC280.4794520547945206No Hit
AGCCTAGACATCCACTGCTGGGCTCGGAGATGTGGTAATGATCCTTCCGC210.3595890410958904No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGCAGAGAC130.2226027397260274No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGGACGCAAAAACTTT130.2226027397260274No Hit
AGCCTAGACATCCACTGCTGGTGTCGTGTCTCGTGGTAATGATCCTTCCG120.2054794520547945No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGGGAC110.18835616438356165No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT110.18835616438356165No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC110.18835616438356165No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGCAGAGAC100.17123287671232876No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGAATAAAAGCAGAGAC100.17123287671232876No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATGAAAGCAGAGAC90.1541095890410959No Hit
AGCCTAGACATCCACTGCTGGAAGTTTGTGGAAGTGAACGCAAAAACTTT90.1541095890410959No Hit
AGCCTAGACATCCACTGCTGAAGGTTTGTGGAAGTGAACGCAAAAACTTT90.1541095890410959No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGCAGAGAC90.1541095890410959No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTTTGGTTAAAACCAAAGACTT80.136986301369863No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAGCGCAAAAACTTT80.136986301369863No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGCAGAGAC80.136986301369863No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCGGAGAC70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAGGTGAACGCAAAAACTTT70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTTTGGGTTAAAACCAAAGACTT70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGTCTCTTATACACATCTGACGCTGCCGACGA70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGCAGAGAC70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGAATAAAAGCAGAGAC70.11986301369863014No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTTTGGGTTAAAACCAAAGACTT70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCGAAAACTTT70.11986301369863014No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTTAACGCAAAAACTTT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTTGGGTTAAAACCAAGGACTT60.10273972602739725No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTCT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAGAGCAGAGAC60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGGC60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGAACTT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGAATAAAAGCAGAGAC60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAATAAAAGCAGAGAC60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGCGAACGCAAAAACTTT60.10273972602739725No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGATAAAAGCAGAGACT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGGAAGTGAACGCAAAAACTTT60.10273972602739725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATTTTAATTACAACTCGTATTC60.10273972602739725No Hit
AGCCTAGAAATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT60.10273972602739725No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)