FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve820.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve820.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13017
Sequences flagged as poor quality0
Sequence length301
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT732456.264884381962055No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGAATAAAACCAACGACTT290922.34769916263348No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT1090.8373665207036952No Hit
AGCCTAGACATCCACTGCTGAAGTGGTAATGATCCTTCCGCTGTCTCTTA630.4839824844434202No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT630.4839824844434202No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC610.468617961127756No Hit
AGCCTAGACATCCACTGCTGTGGTCGGAGTGGTAATGATCCTTCCGCTGT540.41484212952293154No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTAATGATCCTTCCGCTGT470.3610662979181071No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAGAGCAAGGACTT430.3303372512867788No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAGAGCAAGGACTT430.3303372512867788No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTAAGAGCAAGGACTT410.3149727279711147No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTC370.28424368133978645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT370.28424368133978645No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC350.2688791580241223No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGGGCAAGGACTT340.26119689636629023No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACCT310.23815011139279402No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGGCTT300.23046784973496198No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAGAGCAAGGACTT290.22278558807712992No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTAAGAGCAAGGACTT290.22278558807712992No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT280.21510332641929783No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT270.20742106476146577No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT260.19973880310363373No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAGAGCAAGGACTT250.19205654144580164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTAAGAGCAAGGACTT250.19205654144580164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGTACTT230.17669201813013752No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCGAGGACTT220.16900975647230546No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT220.16900975647230546No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT210.16132749481447337No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAGGGACTT210.16132749481447337No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATGGAATAAAACCAACGACTT200.15364523315664133No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATGGAATAAAACCAACGACTT200.15364523315664133No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTAAGAGCAAGGACTT200.15364523315664133No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCATCTAGTAAGAGCAAGGACTT200.15364523315664133No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGTAAGAGCAAGGACTT200.15364523315664133No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAATGACTT200.15364523315664133No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAATAGCAAGGACTT190.14596297149880924No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGTAAGAGCAAGGACTT190.14596297149880924No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTAAGAGCAAGGACTT180.13828070984097718No Hit
AGCCTAGACATCCACTGCTGACGCTGCCGACGAGTGGTAATGATCCTTCC180.13828070984097718No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT170.13059844818314512No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGGAGCAAGGACTT170.13059844818314512No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGTAATAAAACCAACGACTT160.12291618652531305No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGTTAAAAATAAAAACTT150.11523392486748099No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGCAAGAGCAAGGACTT150.11523392486748099No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGAATAAAACCAACGACCT150.11523392486748099No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATGGAATAAAACCAACGACTT150.11523392486748099No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGATCAAGGACTT150.11523392486748099No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTATCTAGTAAGAGCAAGGACTT140.10755166320964892No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTAAGAGCAAGGACTT140.10755166320964892No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGAATAAAACCAACTACTT140.10755166320964892No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATGGAATAAAACCAACGACTT140.10755166320964892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)