FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve805.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve805.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5031
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT217043.13257801629894No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC78615.623136553369111No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATTGTAAATTAATAGTAGTCGT3036.022659511031605No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAAGACT1663.299542834426555No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC1152.285827867223216No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCAATAAAAGCAAGGACTTT961.9081693500298151No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTAATGATCCTTCCGCTGT901.7889087656529516No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT741.4708805406479826No Hit
AGCCTAGACATCCACTGCTGAGATGTGGTAATGATCCTTCCGCTGTCTCT651.2919896640826873No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT611.212482607831445No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT250.49691910157026437No Hit
AGCCTAGACATCCACTGCTGCCGACGTGGTAATGATCCTTCCGCTGTCTC240.4770423375074538No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT210.41741204531902204No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT210.41741204531902204No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGGCTCGGAGATGTGGTAATGATC210.41741204531902204No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT200.39753528125621146No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAGGCAAGGACTTT140.278274696879348No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTGTAAATAAAAGCAAGGACTTT140.278274696879348No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAGGGACTTT110.21864440469091634No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT100.19876764062810573No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTGTAAATAAAAGCAAGGACTTT100.19876764062810573No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAGTAAAAGCAAGGACTTT100.19876764062810573No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTGTAAATAAAAGCAAGGACTTT100.19876764062810573No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTCT100.19876764062810573No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTGTAAATAAAAGCAAGGACTTT90.17889087656529518No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACCTT80.1590141125024846No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCGAGGACTTT80.1590141125024846No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTGTAAATAAAAGCAAGGACTTT80.1590141125024846No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAGAAGCAAGGACTTT80.1590141125024846No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGGCTTT80.1590141125024846No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGTACTTT70.139137348439674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGCAGAGAC70.139137348439674No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT70.139137348439674No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC70.139137348439674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCGTAAATAAAAGCAAGGACTTT70.139137348439674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAGAGCAAGGACTTT70.139137348439674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAATGACTTT70.139137348439674No Hit
AGCCTAGACATCCATTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC60.11926058437686345No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC60.11926058437686345No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGAATAAAAGCAAGGACTTT60.11926058437686345No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAAGACTTT60.11926058437686345No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTC60.11926058437686345No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGCAGAGAC60.11926058437686345No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATGAAAGCAAGGACTTT60.11926058437686345No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)