FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve800.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve800.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5985
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT210835.22138680033417No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT189831.712614870509608No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT66811.16123642439432No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT1031.7209690893901421No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT701.1695906432748537No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACTAAAGACTT450.7518796992481203No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC270.4511278195488722No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT200.3341687552213868No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAGGCAAGAATT180.30075187969924816No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAAGACTT180.30075187969924816No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT180.30075187969924816No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC160.2673350041771094No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTC160.2673350041771094No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT150.2506265664160401No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT130.2172096908939014No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT120.20050125313283207No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAATTAAAAGCAAGAATT120.20050125313283207No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACCT110.18379281537176273No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATC110.18379281537176273No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATTTAATTAAAAGCAAGAATT110.18379281537176273No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTTTAATTAAAAGCAAGAATT110.18379281537176273No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT110.18379281537176273No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT100.1670843776106934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGTACTT100.1670843776106934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGAAGCAAGGACTT100.1670843776106934No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATTTAATTAAAAGCAAGAATT100.1670843776106934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTAAAAGCAAGGACTT90.15037593984962408No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAAAGCAAGGACTT90.15037593984962408No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGTAAAAGCAAGGACTT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGGCTT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGGATT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTCGCTATTTAATTAAAAGCAAGAATT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAAGGACTT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAACT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAATAATT80.1336675020885547No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAAAGCAAGGACTT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTAAAAGCAAGGACTT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAGTTAAAAGCAAGAATT70.11695906432748539No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAGGCAAGGACTT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAGGGACTT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATTTAATTAAAAGCAAGAATT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGGGCAAGGACTT70.11695906432748539No Hit
AGCCTAGACATCCACTGCTGTCTCTTATACACATCTGACGCTGCCGACGA60.10025062656641603No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAGTT60.10025062656641603No Hit
AGCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATTT60.10025062656641603No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT60.10025062656641603No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)