FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve795.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve795.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4591
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT245053.365279895447614No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC71215.508603790023958No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT1583.4415160095839683No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC1012.199956436506208No Hit
AGCCTAGACATCCACTGCTGACGGTGGTAATGATCCTTCCGCTGTCTCTT942.0474842082335005No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGGCCGGAGATGTGGTAATGATC721.5682857765192768No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGCTAAAAGCAGAGACT471.0237421041167503No Hit
AGCCTAGACATCCACTGCTGGTAATGATCCTTCCGCTGTCTCTTATACAC440.958396863428447No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGCAGAGAC230.5009801786103245No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT180.3920714441298192No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTAAAAGCAGAGACT160.3485079503376171No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACC160.3485079503376171No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAGAAGCAGAGACT150.326726203441516No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGATACT150.326726203441516No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT130.2831627096493139No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAGGCAGAGACT130.2831627096493139No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATCTAGTTAAAAGCAGAGACT130.2831627096493139No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCCAGTTAAAAGCAGAGACT120.2613809627532128No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGGCT110.23959921585711175No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT110.23959921585711175No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTTAAAAGCAGAGACT100.21781746896101067No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTGGTTAAAAGCAGAGACT100.21781746896101067No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT100.21781746896101067No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATCTAGTTAAAAGCAGAGACT100.21781746896101067No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCGGAGACT90.1960357220649096No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCATAGACT90.1960357220649096No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGGGACT90.1960357220649096No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT90.1960357220649096No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTCTAGTTAAAAGCAGAGACT80.17425397516880856No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAGAGCAGAGACT80.17425397516880856No Hit
AGCATAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT70.15247222827270746No Hit
AGCCTAGATATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT70.15247222827270746No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATATAGTTAAAAGCAGAGACT70.15247222827270746No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGTAGAGACT70.15247222827270746No Hit
AGCCTAGACATCCACTGCTTAAAGTTGCTATCTAGTTAAAAGCAGAGACT70.15247222827270746No Hit
CGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT70.15247222827270746No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGAATAAAAGCAGAGAC60.1306904813766064No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATGAAAGCAGAGAC60.1306904813766064No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATCTAGTTAAAAGCAGAGACT60.1306904813766064No Hit
AGCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACTT50.10890873448050534No Hit
AGCCTAGACATCCATTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGAAGAGACT50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAGAGCAGAGAC50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTTAAAAGCAGAGACT50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGCAGAGAC50.10890873448050534No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTCAAAAGCAGAGACT50.10890873448050534No Hit
AGCCTAGACATCCACTGTTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT50.10890873448050534No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGCAGAGAC50.10890873448050534No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)