FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve780.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve780.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98
Sequences flagged as poor quality0
Sequence length301
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC7374.48979591836735No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC22.0408163265306123No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAATAAAAGCAGAGAC22.0408163265306123No Hit
AGCCTAGACATCCACTGCCGAAAGTTTGTGGAAGTAAACGCAAAAACTTT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTTAAAAGCAGAGACT11.0204081632653061No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAAAGAC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGCAGGGAACGCAACAACTAT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAATATAACAAACGACTT11.0204081632653061No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC11.0204081632653061No Hit
ACTCCGTGGAATCCGCCGGATACCTTGTAGGCATTGTCGTCGCTGGAATT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGATAC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGCAGAGAC11.0204081632653061No Hit
CGCCCGGACAGCCCGTGAGGAAGAGTGTTATCAGAAAAGGCGAAGAAGTC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAGAAGCAGAGAC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGAAGAGAC11.0204081632653061No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC11.0204081632653061No Hit
AGCCTAGACATACACTGCTTAAAGTTGCTATCTAGTTAAAAGCAGAGACT11.0204081632653061No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAGTAAACGCAAAAACTTT11.0204081632653061No Hit
AGCATCGAATTCAGCTGCTGAAAGGGGGAATAAAGCATGGACGAAGAGAC11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGAAGAGCCT11.0204081632653061No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGTATAGTTACAGTAAAGGTCT11.0204081632653061No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)